Hb_000761_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig761: 43782-44612
Sequence    

Annotation

kegg
ID rcu:RCOM_0799320
description Transcriptional factor TINY, putative
nr
ID XP_002516502.1
description Transcriptional factor TINY, putative [Ricinus communis]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID B9RRY3
description Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_0799320 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dehydration-responsive element-binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000761_030 0.0 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
2 Hb_000081_030 0.0863880663 - - BnaC09g05810D [Brassica napus]
3 Hb_005056_030 0.097065652 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
4 Hb_006268_010 0.1012709667 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
5 Hb_000230_160 0.1116506715 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
6 Hb_000487_140 0.1135142978 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_014115_010 0.1142915124 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_086122_030 0.12102023 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
9 Hb_000286_030 0.1213825451 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_000155_270 0.1214331515 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
11 Hb_161981_010 0.1242203955 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
12 Hb_012762_070 0.1245445015 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
13 Hb_007850_040 0.1247578183 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003058_180 0.1272487045 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_046191_010 0.1288890539 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_008001_020 0.1314719619 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
17 Hb_002622_020 0.1316926902 - - -
18 Hb_006120_010 0.1368024367 - - invertase inhibitor [Manihot esculenta]
19 Hb_002499_020 0.1395628805 - - hevamine-A precursor, putative [Ricinus communis]
20 Hb_060272_010 0.1399906848 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]

Gene co-expression network

sample Hb_000761_030 Hb_000761_030 Hb_000081_030 Hb_000081_030 Hb_000761_030--Hb_000081_030 Hb_005056_030 Hb_005056_030 Hb_000761_030--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_000761_030--Hb_006268_010 Hb_000230_160 Hb_000230_160 Hb_000761_030--Hb_000230_160 Hb_000487_140 Hb_000487_140 Hb_000761_030--Hb_000487_140 Hb_014115_010 Hb_014115_010 Hb_000761_030--Hb_014115_010 Hb_000081_030--Hb_000230_160 Hb_000286_030 Hb_000286_030 Hb_000081_030--Hb_000286_030 Hb_148817_010 Hb_148817_010 Hb_000081_030--Hb_148817_010 Hb_001856_150 Hb_001856_150 Hb_000081_030--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_000081_030--Hb_006314_020 Hb_005056_030--Hb_006268_010 Hb_002622_020 Hb_002622_020 Hb_005056_030--Hb_002622_020 Hb_012762_070 Hb_012762_070 Hb_005056_030--Hb_012762_070 Hb_046191_010 Hb_046191_010 Hb_005056_030--Hb_046191_010 Hb_000472_030 Hb_000472_030 Hb_005056_030--Hb_000472_030 Hb_007850_040 Hb_007850_040 Hb_006268_010--Hb_007850_040 Hb_000155_270 Hb_000155_270 Hb_006268_010--Hb_000155_270 Hb_006268_010--Hb_002622_020 Hb_086122_030 Hb_086122_030 Hb_006268_010--Hb_086122_030 Hb_060272_010 Hb_060272_010 Hb_006268_010--Hb_060272_010 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_001856_150 Hb_000230_160--Hb_000286_030 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_000230_160--Hb_006314_020 Hb_000487_140--Hb_003058_180 Hb_003805_080 Hb_003805_080 Hb_000487_140--Hb_003805_080 Hb_006120_010 Hb_006120_010 Hb_000487_140--Hb_006120_010 Hb_001863_080 Hb_001863_080 Hb_000487_140--Hb_001863_080 Hb_188923_010 Hb_188923_010 Hb_000487_140--Hb_188923_010 Hb_014115_010--Hb_046191_010 Hb_000306_050 Hb_000306_050 Hb_014115_010--Hb_000306_050 Hb_014115_010--Hb_005056_030 Hb_014115_010--Hb_000081_030 Hb_014115_010--Hb_006120_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0279214 3.17586 0.0654934 5.37747 0 0.0578657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.54913 0.101691

CAGE analysis