Hb_003058_180

Information

Type transcription factor
Description TF Family: HSF
Location Contig3058: 168306-169879
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28040g
description POPTRDRAFT_641429; hypothetical protein
nr
ID XP_002298460.1
description hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
swissprot
ID Q9C635
description Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1
trembl
ID B9GG64
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28040g PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor b-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_180 0.0 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
2 Hb_000230_160 0.0598821339 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
3 Hb_006120_010 0.0668762345 - - invertase inhibitor [Manihot esculenta]
4 Hb_188923_010 0.0934520287 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_001856_150 0.0982205392 - - -
6 Hb_003805_080 0.1002865839 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
7 Hb_000487_140 0.1018136152 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_003435_070 0.1022472172 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
9 Hb_000081_030 0.1033209603 - - BnaC09g05810D [Brassica napus]
10 Hb_000967_010 0.1041071631 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
11 Hb_000286_030 0.1114995589 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_001863_080 0.1137080937 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
13 Hb_135811_040 0.117367393 - - conserved hypothetical protein [Ricinus communis]
14 Hb_118707_020 0.1197169918 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022181_010 0.1205822922 - - PREDICTED: peroxidase 19 [Jatropha curcas]
16 Hb_000172_740 0.1209992567 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
17 Hb_028008_030 0.1249660903 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
18 Hb_000761_030 0.1272487045 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
19 Hb_011452_020 0.1302029635 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
20 Hb_014115_010 0.1309373579 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003058_180 Hb_003058_180 Hb_000230_160 Hb_000230_160 Hb_003058_180--Hb_000230_160 Hb_006120_010 Hb_006120_010 Hb_003058_180--Hb_006120_010 Hb_188923_010 Hb_188923_010 Hb_003058_180--Hb_188923_010 Hb_001856_150 Hb_001856_150 Hb_003058_180--Hb_001856_150 Hb_003805_080 Hb_003805_080 Hb_003058_180--Hb_003805_080 Hb_000487_140 Hb_000487_140 Hb_003058_180--Hb_000487_140 Hb_000081_030 Hb_000081_030 Hb_000230_160--Hb_000081_030 Hb_000230_160--Hb_001856_150 Hb_000286_030 Hb_000286_030 Hb_000230_160--Hb_000286_030 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_006314_020 Hb_006314_020 Hb_000230_160--Hb_006314_020 Hb_046191_010 Hb_046191_010 Hb_006120_010--Hb_046191_010 Hb_002499_020 Hb_002499_020 Hb_006120_010--Hb_002499_020 Hb_006120_010--Hb_000230_160 Hb_000077_450 Hb_000077_450 Hb_006120_010--Hb_000077_450 Hb_006120_010--Hb_188923_010 Hb_000967_010 Hb_000967_010 Hb_188923_010--Hb_000967_010 Hb_188923_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_188923_010--Hb_003787_060 Hb_001863_080 Hb_001863_080 Hb_188923_010--Hb_001863_080 Hb_118707_020 Hb_118707_020 Hb_188923_010--Hb_118707_020 Hb_001856_150--Hb_006314_020 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040 Hb_003805_080--Hb_003787_060 Hb_003805_080--Hb_028008_030 Hb_039496_010 Hb_039496_010 Hb_003805_080--Hb_039496_010 Hb_003805_080--Hb_000230_160 Hb_000487_140--Hb_003805_080 Hb_000487_140--Hb_006120_010 Hb_000761_030 Hb_000761_030 Hb_000487_140--Hb_000761_030 Hb_000487_140--Hb_001863_080 Hb_000487_140--Hb_188923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0816751 2.59908 0.298184 7.15903 0.0422594 0.0383604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.6369 0.562188

CAGE analysis