Hb_188923_010

Information

Type -
Description -
Location Contig188923: 878-1578
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004113mg
description hypothetical protein
nr
ID XP_012085478.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JRX8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_17810 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188923_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_000967_010 0.0655301315 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
3 Hb_003805_080 0.0827683913 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
4 Hb_003787_060 0.0828528391 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_003058_180 0.0934520287 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
6 Hb_001863_080 0.0934709468 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
7 Hb_118707_020 0.0945369877 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000230_160 0.1060982616 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
9 Hb_000172_740 0.1095049087 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
10 Hb_003734_120 0.1104160484 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
11 Hb_006120_010 0.1113685675 - - invertase inhibitor [Manihot esculenta]
12 Hb_039496_010 0.114206913 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_135811_040 0.1144577378 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000487_140 0.1171539035 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_003435_070 0.1183637067 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
16 Hb_150084_010 0.1208572921 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
17 Hb_000276_030 0.122914609 - - dimethylaniline monooxygenase, putative [Ricinus communis]
18 Hb_000487_240 0.1268427545 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
19 Hb_000963_010 0.1283666314 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
20 Hb_002182_050 0.1311647842 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]

Gene co-expression network

sample Hb_188923_010 Hb_188923_010 Hb_000967_010 Hb_000967_010 Hb_188923_010--Hb_000967_010 Hb_003805_080 Hb_003805_080 Hb_188923_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_188923_010--Hb_003787_060 Hb_003058_180 Hb_003058_180 Hb_188923_010--Hb_003058_180 Hb_001863_080 Hb_001863_080 Hb_188923_010--Hb_001863_080 Hb_118707_020 Hb_118707_020 Hb_188923_010--Hb_118707_020 Hb_000967_010--Hb_118707_020 Hb_008727_030 Hb_008727_030 Hb_000967_010--Hb_008727_030 Hb_003435_070 Hb_003435_070 Hb_000967_010--Hb_003435_070 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_135811_040 Hb_135811_040 Hb_000967_010--Hb_135811_040 Hb_003805_080--Hb_003787_060 Hb_028008_030 Hb_028008_030 Hb_003805_080--Hb_028008_030 Hb_039496_010 Hb_039496_010 Hb_003805_080--Hb_039496_010 Hb_000230_160 Hb_000230_160 Hb_003805_080--Hb_000230_160 Hb_003805_080--Hb_003058_180 Hb_003787_060--Hb_039496_010 Hb_000963_010 Hb_000963_010 Hb_003787_060--Hb_000963_010 Hb_000934_290 Hb_000934_290 Hb_003787_060--Hb_000934_290 Hb_003734_120 Hb_003734_120 Hb_003787_060--Hb_003734_120 Hb_003058_180--Hb_000230_160 Hb_006120_010 Hb_006120_010 Hb_003058_180--Hb_006120_010 Hb_001856_150 Hb_001856_150 Hb_003058_180--Hb_001856_150 Hb_000487_140 Hb_000487_140 Hb_003058_180--Hb_000487_140 Hb_000172_740 Hb_000172_740 Hb_001863_080--Hb_000172_740 Hb_000286_030 Hb_000286_030 Hb_001863_080--Hb_000286_030 Hb_001863_080--Hb_003058_180 Hb_150084_010 Hb_150084_010 Hb_001863_080--Hb_150084_010 Hb_001863_080--Hb_000487_140 Hb_118707_020--Hb_008727_030 Hb_118707_020--Hb_135811_040 Hb_118707_020--Hb_003435_070 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.593532 0.143657 1.3476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.68868 0.20346

CAGE analysis