Hb_008727_030

Information

Type -
Description -
Location Contig8727: 23957-24310
Sequence    

Annotation

kegg
ID rcu:RCOM_0175580
description hypothetical protein
nr
ID XP_002527513.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008727_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000967_010 0.082575984 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
3 Hb_118707_020 0.0906750548 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003435_070 0.1053935983 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
5 Hb_003789_020 0.1062876186 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
6 Hb_005144_180 0.1093436139 - - PREDICTED: protein enabled homolog [Populus euphratica]
7 Hb_011139_010 0.1119327418 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_000318_060 0.1143430051 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011452_020 0.1149006173 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
10 Hb_000380_210 0.1194257633 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
11 Hb_003097_200 0.1297211995 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000139_500 0.130660621 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
13 Hb_003171_070 0.134647162 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
14 Hb_000797_030 0.1356077647 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
15 Hb_005333_120 0.1363280389 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
16 Hb_021418_010 0.13899419 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
17 Hb_000676_380 0.1407433081 - - cytochrome P450 family protein [Populus trichocarpa]
18 Hb_135811_040 0.1417704354 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003768_100 0.1429749227 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
20 Hb_000077_450 0.1444062532 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008727_030 Hb_008727_030 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010 Hb_000967_010--Hb_118707_020 Hb_188923_010 Hb_188923_010 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_003435_070 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_135811_040 Hb_135811_040 Hb_000967_010--Hb_135811_040 Hb_118707_020--Hb_188923_010 Hb_118707_020--Hb_135811_040 Hb_118707_020--Hb_003435_070 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_001856_150 Hb_001856_150 Hb_003435_070--Hb_001856_150 Hb_003058_180 Hb_003058_180 Hb_003435_070--Hb_003058_180 Hb_003789_020--Hb_011139_010 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_182831_020 Hb_182831_020 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_003789_020--Hb_005144_180 Hb_005144_180--Hb_118707_020 Hb_001758_120 Hb_001758_120 Hb_005144_180--Hb_001758_120 Hb_005144_180--Hb_000380_210 Hb_003090_230 Hb_003090_230 Hb_005144_180--Hb_003090_230 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.794775 0.885961 7.5123 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.3379 1.00897

CAGE analysis