Hb_030394_050

Information

Type -
Description -
Location Contig30394: 26776-27132
Sequence    

Annotation

kegg
ID rcu:RCOM_0885330
description lipid binding protein, putative
nr
ID XP_002522644.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9H5
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0885330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030394_050 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_003789_020 0.108807589 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
3 Hb_011139_010 0.1351146846 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_182831_020 0.1446206917 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_001360_060 0.1511057929 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
6 Hb_161346_010 0.1644472651 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
7 Hb_005144_180 0.1684506582 - - PREDICTED: protein enabled homolog [Populus euphratica]
8 Hb_008727_030 0.172532463 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003177_100 0.1737125995 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
10 Hb_005503_010 0.1833780029 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
11 Hb_009780_110 0.1861064185 - - PREDICTED: protein RSI-1 [Cicer arietinum]
12 Hb_081282_010 0.1970696971 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
13 Hb_003090_230 0.1994382447 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003177_080 0.2012531127 - - hypothetical protein L484_016032 [Morus notabilis]
15 Hb_003171_070 0.2018186542 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
16 Hb_083845_010 0.2019157778 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
17 Hb_113803_010 0.2049563198 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000676_380 0.2054547087 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_001863_280 0.207161522 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
20 Hb_001357_370 0.2111967524 - - -

Gene co-expression network

sample Hb_030394_050 Hb_030394_050 Hb_003789_020 Hb_003789_020 Hb_030394_050--Hb_003789_020 Hb_011139_010 Hb_011139_010 Hb_030394_050--Hb_011139_010 Hb_182831_020 Hb_182831_020 Hb_030394_050--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_030394_050--Hb_001360_060 Hb_161346_010 Hb_161346_010 Hb_030394_050--Hb_161346_010 Hb_005144_180 Hb_005144_180 Hb_030394_050--Hb_005144_180 Hb_003789_020--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_003789_020--Hb_008727_030 Hb_003789_020--Hb_182831_020 Hb_003789_020--Hb_001360_060 Hb_003789_020--Hb_005144_180 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_008727_030 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_011139_010--Hb_161346_010 Hb_182831_020--Hb_161346_010 Hb_003171_070 Hb_003171_070 Hb_182831_020--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380 Hb_003177_080 Hb_003177_080 Hb_001360_060--Hb_003177_080 Hb_003097_200 Hb_003097_200 Hb_001360_060--Hb_003097_200 Hb_156499_010 Hb_156499_010 Hb_001360_060--Hb_156499_010 Hb_000797_030 Hb_000797_030 Hb_001360_060--Hb_000797_030 Hb_001360_060--Hb_011139_010 Hb_161346_010--Hb_003171_070 Hb_161346_010--Hb_131029_010 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_161346_010--Hb_003789_020 Hb_005144_180--Hb_008727_030 Hb_118707_020 Hb_118707_020 Hb_005144_180--Hb_118707_020 Hb_001758_120 Hb_001758_120 Hb_005144_180--Hb_001758_120 Hb_000380_210 Hb_000380_210 Hb_005144_180--Hb_000380_210 Hb_003090_230 Hb_003090_230 Hb_005144_180--Hb_003090_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.10705 12.506 0 0.413919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.2298 0.994537

CAGE analysis