Hb_005144_180

Information

Type -
Description -
Location Contig5144: 132681-133566
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01160g
description POPTRDRAFT_558314; hypothetical protein
nr
ID XP_011032315.1
description PREDICTED: protein enabled homolog [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HQN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01160g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46457: 132637-133456 , PASA_asmbl_46458: 133478-134176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_180 0.0 - - PREDICTED: protein enabled homolog [Populus euphratica]
2 Hb_008727_030 0.1093436139 - - conserved hypothetical protein [Ricinus communis]
3 Hb_118707_020 0.11527413 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001758_120 0.1193090238 - - unnamed protein product [Vitis vinifera]
5 Hb_003789_020 0.123774783 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
6 Hb_000380_210 0.1238617376 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
7 Hb_003090_230 0.1301322815 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012368_080 0.1319497964 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
9 Hb_021418_010 0.1327512231 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
10 Hb_098030_010 0.1349547012 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
11 Hb_011452_020 0.1372945158 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
12 Hb_000967_010 0.1378758412 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
13 Hb_003893_100 0.1452660448 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
14 Hb_003097_200 0.1461472089 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000797_030 0.1473700338 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
16 Hb_011139_010 0.1477338727 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_006637_040 0.1481064795 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
18 Hb_135811_040 0.1482696652 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000077_450 0.1508692049 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_003435_070 0.156470057 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_180 Hb_005144_180 Hb_008727_030 Hb_008727_030 Hb_005144_180--Hb_008727_030 Hb_118707_020 Hb_118707_020 Hb_005144_180--Hb_118707_020 Hb_001758_120 Hb_001758_120 Hb_005144_180--Hb_001758_120 Hb_003789_020 Hb_003789_020 Hb_005144_180--Hb_003789_020 Hb_000380_210 Hb_000380_210 Hb_005144_180--Hb_000380_210 Hb_003090_230 Hb_003090_230 Hb_005144_180--Hb_003090_230 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_008727_030--Hb_003789_020 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010 Hb_118707_020--Hb_000967_010 Hb_188923_010 Hb_188923_010 Hb_118707_020--Hb_188923_010 Hb_135811_040 Hb_135811_040 Hb_118707_020--Hb_135811_040 Hb_118707_020--Hb_003435_070 Hb_118707_020--Hb_000380_210 Hb_006637_040 Hb_006637_040 Hb_001758_120--Hb_006637_040 Hb_003893_100 Hb_003893_100 Hb_001758_120--Hb_003893_100 Hb_000797_030 Hb_000797_030 Hb_001758_120--Hb_000797_030 Hb_002749_070 Hb_002749_070 Hb_001758_120--Hb_002749_070 Hb_003097_200 Hb_003097_200 Hb_001758_120--Hb_003097_200 Hb_164283_010 Hb_164283_010 Hb_001758_120--Hb_164283_010 Hb_003789_020--Hb_011139_010 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_182831_020 Hb_182831_020 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_000380_210--Hb_008727_030 Hb_018133_110 Hb_018133_110 Hb_000380_210--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_000380_210--Hb_000032_560 Hb_000676_380 Hb_000676_380 Hb_003090_230--Hb_000676_380 Hb_020805_110 Hb_020805_110 Hb_003090_230--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_003090_230--Hb_009711_040 Hb_003090_230--Hb_021418_010 Hb_004875_040 Hb_004875_040 Hb_003090_230--Hb_004875_040 Hb_001596_030 Hb_001596_030 Hb_003090_230--Hb_001596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409064 1.1451 1.7701 14.7186 0.0299578 0.240385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 27.488 1.26892

CAGE analysis