Hb_135811_040

Information

Type -
Description -
Location Contig135811: 46639-48593
Sequence    

Annotation

kegg
ID rcu:RCOM_0531940
description hypothetical protein
nr
ID XP_002526962.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLU3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0531940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135811_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_118707_020 0.096588535 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000967_010 0.1032754561 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
4 Hb_188923_010 0.1144577378 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_002016_020 0.1168576696 - - RALFL33, putative [Ricinus communis]
6 Hb_003058_180 0.117367393 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
7 Hb_000032_560 0.1201021589 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
8 Hb_003805_080 0.1247511698 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
9 Hb_004462_040 0.1258988871 - - unnamed protein product [Vitis vinifera]
10 Hb_001369_620 0.1293322585 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
11 Hb_003435_070 0.1322189928 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
12 Hb_003734_120 0.1334642451 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
13 Hb_005333_120 0.1337306139 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
14 Hb_018133_110 0.1359593092 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_003787_060 0.1402630635 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_000380_210 0.1408231975 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_008727_030 0.1417704354 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006120_010 0.1444580674 - - invertase inhibitor [Manihot esculenta]
19 Hb_000230_160 0.1457107133 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
20 Hb_025254_020 0.1469348441 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_135811_040 Hb_135811_040 Hb_118707_020 Hb_118707_020 Hb_135811_040--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_135811_040--Hb_000967_010 Hb_188923_010 Hb_188923_010 Hb_135811_040--Hb_188923_010 Hb_002016_020 Hb_002016_020 Hb_135811_040--Hb_002016_020 Hb_003058_180 Hb_003058_180 Hb_135811_040--Hb_003058_180 Hb_000032_560 Hb_000032_560 Hb_135811_040--Hb_000032_560 Hb_118707_020--Hb_000967_010 Hb_008727_030 Hb_008727_030 Hb_118707_020--Hb_008727_030 Hb_118707_020--Hb_188923_010 Hb_003435_070 Hb_003435_070 Hb_118707_020--Hb_003435_070 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_008727_030 Hb_000967_010--Hb_003435_070 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_003805_080 Hb_003805_080 Hb_188923_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_188923_010--Hb_003787_060 Hb_188923_010--Hb_003058_180 Hb_001863_080 Hb_001863_080 Hb_188923_010--Hb_001863_080 Hb_001369_620 Hb_001369_620 Hb_002016_020--Hb_001369_620 Hb_002016_020--Hb_000032_560 Hb_001959_030 Hb_001959_030 Hb_002016_020--Hb_001959_030 Hb_002597_010 Hb_002597_010 Hb_002016_020--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_002016_020--Hb_000580_070 Hb_000230_160 Hb_000230_160 Hb_003058_180--Hb_000230_160 Hb_006120_010 Hb_006120_010 Hb_003058_180--Hb_006120_010 Hb_001856_150 Hb_001856_150 Hb_003058_180--Hb_001856_150 Hb_003058_180--Hb_003805_080 Hb_000487_140 Hb_000487_140 Hb_003058_180--Hb_000487_140 Hb_018133_110 Hb_018133_110 Hb_000032_560--Hb_018133_110 Hb_000032_560--Hb_000580_070 Hb_000032_560--Hb_118707_020 Hb_000032_560--Hb_002597_010 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35192 0.588255 4.63838 0.163749 0.140026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0208703 0 9.01416 0.526825

CAGE analysis