Hb_002016_020

Information

Type -
Description -
Location Contig2016: 36527-36880
Sequence    

Annotation

kegg
ID rcu:RCOM_1439830
description RALFL33, putative
nr
ID XP_002531878.1
description RALFL33, putative [Ricinus communis]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID B9T0V9
description RALFL33, putative OS=Ricinus communis GN=RCOM_1439830 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein ralf-like 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20491: 36685-36980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_020 0.0 - - RALFL33, putative [Ricinus communis]
2 Hb_001369_620 0.1155092441 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
3 Hb_135811_040 0.1168576696 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000032_560 0.1215073037 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
5 Hb_001959_030 0.1283294965 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002597_010 0.1285842338 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
7 Hb_000580_070 0.1392775786 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_000003_510 0.1428991755 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
9 Hb_018133_110 0.1429574468 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_118707_020 0.1450861879 - - conserved hypothetical protein [Ricinus communis]
11 Hb_025254_020 0.1460574898 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
12 Hb_003734_120 0.1471734404 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
13 Hb_006637_040 0.1530781549 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
14 Hb_001470_040 0.1552169951 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
15 Hb_000041_290 0.1555785249 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_002042_200 0.1575462751 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_000276_030 0.1590564327 - - dimethylaniline monooxygenase, putative [Ricinus communis]
18 Hb_080147_060 0.1605113997 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
19 Hb_001623_400 0.1638077204 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002301_420 0.1655563922 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]

Gene co-expression network

sample Hb_002016_020 Hb_002016_020 Hb_001369_620 Hb_001369_620 Hb_002016_020--Hb_001369_620 Hb_135811_040 Hb_135811_040 Hb_002016_020--Hb_135811_040 Hb_000032_560 Hb_000032_560 Hb_002016_020--Hb_000032_560 Hb_001959_030 Hb_001959_030 Hb_002016_020--Hb_001959_030 Hb_002597_010 Hb_002597_010 Hb_002016_020--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_002016_020--Hb_000580_070 Hb_000003_510 Hb_000003_510 Hb_001369_620--Hb_000003_510 Hb_001053_110 Hb_001053_110 Hb_001369_620--Hb_001053_110 Hb_003734_120 Hb_003734_120 Hb_001369_620--Hb_003734_120 Hb_003805_080 Hb_003805_080 Hb_001369_620--Hb_003805_080 Hb_001963_020 Hb_001963_020 Hb_001369_620--Hb_001963_020 Hb_118707_020 Hb_118707_020 Hb_135811_040--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_135811_040--Hb_000967_010 Hb_188923_010 Hb_188923_010 Hb_135811_040--Hb_188923_010 Hb_003058_180 Hb_003058_180 Hb_135811_040--Hb_003058_180 Hb_135811_040--Hb_000032_560 Hb_018133_110 Hb_018133_110 Hb_000032_560--Hb_018133_110 Hb_000032_560--Hb_000580_070 Hb_000032_560--Hb_118707_020 Hb_000032_560--Hb_002597_010 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_002042_200 Hb_002042_200 Hb_001959_030--Hb_002042_200 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_001959_030--Hb_018133_110 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_002597_010--Hb_018133_110 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107039 2.60159 2.30784 7.65936 0.708379 0.3951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.25512 0 0 18.4241 1.00897

CAGE analysis