Hb_025254_020

Information

Type -
Description -
Location Contig25254: 29839-33583
Sequence    

Annotation

kegg
ID vvi:100261093
description formate dehydrogenase, mitochondrial
nr
ID XP_002278444.1
description PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
swissprot
ID Q07511
description Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2
trembl
ID D7TWQ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01320 PE=3 SV=1
Gene Ontology
ID GO:0009507
description formate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26428: 29759-33476 , PASA_asmbl_26430: 33015-33242 , PASA_asmbl_26431: 31804-32016
cDNA
(Sanger)
(ID:Location)		 014_L19.ab1: 31317-33423 , 027_G10.ab1: 31544-33423 , 042_E14.ab1: 31383-33423 , 053_P15.ab1: 31392-33431

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025254_020 0.0 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
2 Hb_000099_020 0.1169717461 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
3 Hb_001959_030 0.1234362402 - - conserved hypothetical protein [Ricinus communis]
4 Hb_018133_110 0.129497893 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002042_200 0.1429314448 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000032_560 0.1431531476 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
7 Hb_002016_020 0.1460574898 - - RALFL33, putative [Ricinus communis]
8 Hb_135811_040 0.1469348441 - - conserved hypothetical protein [Ricinus communis]
9 Hb_116478_010 0.1489214615 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
10 Hb_000915_070 0.1528783578 - - ATP binding protein, putative [Ricinus communis]
11 Hb_006120_010 0.1547456916 - - invertase inhibitor [Manihot esculenta]
12 Hb_003058_180 0.1547749678 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
13 Hb_002597_010 0.1569548681 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
14 Hb_001369_620 0.1586895986 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
15 Hb_003090_230 0.1600706558 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000380_210 0.164012187 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_002499_020 0.1655368736 - - hevamine-A precursor, putative [Ricinus communis]
18 Hb_027634_010 0.1659632629 - - protein binding protein, putative [Ricinus communis]
19 Hb_004122_030 0.1660303421 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
20 Hb_007181_080 0.1663002385 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_025254_020 Hb_025254_020 Hb_000099_020 Hb_000099_020 Hb_025254_020--Hb_000099_020 Hb_001959_030 Hb_001959_030 Hb_025254_020--Hb_001959_030 Hb_018133_110 Hb_018133_110 Hb_025254_020--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_025254_020--Hb_002042_200 Hb_000032_560 Hb_000032_560 Hb_025254_020--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_025254_020--Hb_002016_020 Hb_004122_030 Hb_004122_030 Hb_000099_020--Hb_004122_030 Hb_014115_010 Hb_014115_010 Hb_000099_020--Hb_014115_010 Hb_007181_080 Hb_007181_080 Hb_000099_020--Hb_007181_080 Hb_046191_010 Hb_046191_010 Hb_000099_020--Hb_046191_010 Hb_001493_170 Hb_001493_170 Hb_000099_020--Hb_001493_170 Hb_001959_030--Hb_002042_200 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_001623_400 Hb_001623_400 Hb_002042_200--Hb_001623_400 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_002016_020--Hb_001369_620 Hb_002016_020--Hb_135811_040 Hb_002016_020--Hb_000032_560 Hb_002016_020--Hb_002597_010 Hb_002016_020--Hb_000580_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.88787 51.2235 13.006 129.072 4.69098 4.85915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.25805 0.997744 1.67735 297.958 3.18997

CAGE analysis