Hb_000099_020

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig99: 35112-45847
Sequence    

Annotation

kegg
ID mdm:103431057
description uncharacterized LOC103431057
nr
ID XP_008367429.1
description PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
swissprot
ID Q9LYS2
description ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2
trembl
ID B9GL97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10240g PE=3 SV=2
Gene Ontology
ID GO:0016021
description abc transporter c family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_020 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
2 Hb_025254_020 0.1169717461 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
3 Hb_004122_030 0.1437196994 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
4 Hb_014115_010 0.1465649831 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_007181_080 0.1476137075 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_046191_010 0.1503576573 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001493_170 0.1503710884 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
8 Hb_002499_020 0.1546881094 - - hevamine-A precursor, putative [Ricinus communis]
9 Hb_003058_180 0.1561095225 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_006120_010 0.1567081264 - - invertase inhibitor [Manihot esculenta]
11 Hb_001348_220 0.1571110736 - - PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]
12 Hb_022181_010 0.1586895239 - - PREDICTED: peroxidase 19 [Jatropha curcas]
13 Hb_000761_030 0.162549916 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
14 Hb_001522_050 0.1669670638 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
15 Hb_000230_160 0.1710394803 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
16 Hb_005056_030 0.171712455 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
17 Hb_003090_230 0.1723896936 - - conserved hypothetical protein [Ricinus communis]
18 Hb_020805_110 0.1731620389 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
19 Hb_000081_030 0.1772982065 - - BnaC09g05810D [Brassica napus]
20 Hb_001959_030 0.1776492422 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000099_020 Hb_000099_020 Hb_025254_020 Hb_025254_020 Hb_000099_020--Hb_025254_020 Hb_004122_030 Hb_004122_030 Hb_000099_020--Hb_004122_030 Hb_014115_010 Hb_014115_010 Hb_000099_020--Hb_014115_010 Hb_007181_080 Hb_007181_080 Hb_000099_020--Hb_007181_080 Hb_046191_010 Hb_046191_010 Hb_000099_020--Hb_046191_010 Hb_001493_170 Hb_001493_170 Hb_000099_020--Hb_001493_170 Hb_001959_030 Hb_001959_030 Hb_025254_020--Hb_001959_030 Hb_018133_110 Hb_018133_110 Hb_025254_020--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_025254_020--Hb_002042_200 Hb_000032_560 Hb_000032_560 Hb_025254_020--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_025254_020--Hb_002016_020 Hb_004122_030--Hb_002042_200 Hb_027634_010 Hb_027634_010 Hb_004122_030--Hb_027634_010 Hb_004122_030--Hb_001959_030 Hb_001369_620 Hb_001369_620 Hb_004122_030--Hb_001369_620 Hb_005237_070 Hb_005237_070 Hb_004122_030--Hb_005237_070 Hb_014115_010--Hb_046191_010 Hb_000306_050 Hb_000306_050 Hb_014115_010--Hb_000306_050 Hb_005056_030 Hb_005056_030 Hb_014115_010--Hb_005056_030 Hb_000081_030 Hb_000081_030 Hb_014115_010--Hb_000081_030 Hb_000761_030 Hb_000761_030 Hb_014115_010--Hb_000761_030 Hb_006120_010 Hb_006120_010 Hb_014115_010--Hb_006120_010 Hb_021418_010 Hb_021418_010 Hb_007181_080--Hb_021418_010 Hb_010571_010 Hb_010571_010 Hb_007181_080--Hb_010571_010 Hb_002499_020 Hb_002499_020 Hb_007181_080--Hb_002499_020 Hb_007181_080--Hb_046191_010 Hb_007181_080--Hb_006120_010 Hb_046191_010--Hb_002499_020 Hb_046191_010--Hb_010571_010 Hb_003469_030 Hb_003469_030 Hb_046191_010--Hb_003469_030 Hb_046191_010--Hb_005056_030 Hb_046191_010--Hb_006120_010 Hb_003967_010 Hb_003967_010 Hb_001493_170--Hb_003967_010 Hb_028008_030 Hb_028008_030 Hb_001493_170--Hb_028008_030 Hb_001493_170--Hb_000761_030 Hb_000230_160 Hb_000230_160 Hb_001493_170--Hb_000230_160 Hb_008001_020 Hb_008001_020 Hb_001493_170--Hb_008001_020 Hb_001493_170--Hb_000081_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141318 0.163593 0.0167072 0.380588 0.012654 0.00567495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00715609 0.0112639 0 0.654901 0

CAGE analysis