Hb_004122_030

Information

Type transcription factor
Description TF Family: HB
Location Contig4122: 35601-37371
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02540g
description homeobox-leucine zipper transcription factor family protein
nr
ID XP_011029533.1
description PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
swissprot
ID Q6X7J9
description WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1
trembl
ID B9MVU1
description Homeobox-leucine zipper transcription factor family protein OS=Populus trichocarpa GN=POPTR_0014s02540g PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004122_030 0.0 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
2 Hb_002042_200 0.1434276992 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000099_020 0.1437196994 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
4 Hb_027634_010 0.1462419662 - - protein binding protein, putative [Ricinus communis]
5 Hb_001959_030 0.1487195202 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001369_620 0.1505956145 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
7 Hb_005237_070 0.1549537867 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
8 Hb_017491_040 0.1574357354 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
9 Hb_008705_040 0.1595802623 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_025254_020 0.1660303421 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
11 Hb_028008_030 0.168417681 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
12 Hb_000836_250 0.1691971748 - - hypothetical protein VITISV_022299 [Vitis vinifera]
13 Hb_001623_400 0.1747778123 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003805_080 0.1785437718 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_048476_010 0.1790153684 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
16 Hb_000041_290 0.1823881217 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000230_160 0.1832387378 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
18 Hb_003058_180 0.1838047852 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
19 Hb_014115_010 0.1846609889 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000306_050 0.1856826201 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_004122_030 Hb_004122_030 Hb_002042_200 Hb_002042_200 Hb_004122_030--Hb_002042_200 Hb_000099_020 Hb_000099_020 Hb_004122_030--Hb_000099_020 Hb_027634_010 Hb_027634_010 Hb_004122_030--Hb_027634_010 Hb_001959_030 Hb_001959_030 Hb_004122_030--Hb_001959_030 Hb_001369_620 Hb_001369_620 Hb_004122_030--Hb_001369_620 Hb_005237_070 Hb_005237_070 Hb_004122_030--Hb_005237_070 Hb_001623_400 Hb_001623_400 Hb_002042_200--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_002042_200--Hb_018133_110 Hb_000175_480 Hb_000175_480 Hb_002042_200--Hb_000175_480 Hb_002042_200--Hb_027634_010 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_002042_200--Hb_001959_030 Hb_025254_020 Hb_025254_020 Hb_000099_020--Hb_025254_020 Hb_014115_010 Hb_014115_010 Hb_000099_020--Hb_014115_010 Hb_007181_080 Hb_007181_080 Hb_000099_020--Hb_007181_080 Hb_046191_010 Hb_046191_010 Hb_000099_020--Hb_046191_010 Hb_001493_170 Hb_001493_170 Hb_000099_020--Hb_001493_170 Hb_027634_010--Hb_000175_480 Hb_027634_010--Hb_001623_400 Hb_027634_010--Hb_018133_110 Hb_027634_010--Hb_001959_030 Hb_001959_030--Hb_025254_020 Hb_002016_020 Hb_002016_020 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001959_030--Hb_001369_620 Hb_001959_030--Hb_000175_480 Hb_000003_510 Hb_000003_510 Hb_001369_620--Hb_000003_510 Hb_001053_110 Hb_001053_110 Hb_001369_620--Hb_001053_110 Hb_001369_620--Hb_002016_020 Hb_003734_120 Hb_003734_120 Hb_001369_620--Hb_003734_120 Hb_003805_080 Hb_003805_080 Hb_001369_620--Hb_003805_080 Hb_001963_020 Hb_001963_020 Hb_001369_620--Hb_001963_020 Hb_002289_110 Hb_002289_110 Hb_005237_070--Hb_002289_110 Hb_001856_160 Hb_001856_160 Hb_005237_070--Hb_001856_160 Hb_001799_090 Hb_001799_090 Hb_005237_070--Hb_001799_090 Hb_028008_030 Hb_028008_030 Hb_005237_070--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_005237_070--Hb_005144_100 Hb_005489_120 Hb_005489_120 Hb_005237_070--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96523 10.4025 3.14773 18.5356 1.02188 0.128677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 31.8084 0.0586382

CAGE analysis