Hb_005144_100

Information

Type -
Description -
Location Contig5144: 72449-74171
Sequence    

Annotation

kegg
ID rcu:RCOM_0474040
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_002523709.1
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q9SJL9
description Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1
trembl
ID B9SCJ0
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_0474040 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46447: 72528-72651 , PASA_asmbl_46448: 72875-74186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_100 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
2 Hb_002217_210 0.0941403147 - - -
3 Hb_001998_260 0.1037430471 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003266_060 0.1134669368 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
5 Hb_008959_050 0.113674369 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
6 Hb_004635_040 0.1141248256 - - Polyprotein, putative [Solanum demissum]
7 Hb_001799_090 0.1207562138 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
8 Hb_002289_110 0.1255675195 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
9 Hb_000069_520 0.126107246 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
10 Hb_006395_010 0.1267376351 - - hypothetical protein RCOM_0725500 [Ricinus communis]
11 Hb_001856_160 0.1299570422 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012516_030 0.1317932713 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
13 Hb_000566_170 0.1353068432 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
14 Hb_006020_010 0.1387285553 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
15 Hb_002044_110 0.1423867669 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
16 Hb_005237_070 0.1478627508 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
17 Hb_010614_020 0.1481674813 - - BnaC05g27570D [Brassica napus]
18 Hb_000510_210 0.1491823798 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
19 Hb_002894_040 0.1503844358 - - conserved hypothetical protein [Ricinus communis]
20 Hb_183820_010 0.1512503955 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005144_100 Hb_005144_100 Hb_002217_210 Hb_002217_210 Hb_005144_100--Hb_002217_210 Hb_001998_260 Hb_001998_260 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_008959_050 Hb_008959_050 Hb_005144_100--Hb_008959_050 Hb_004635_040 Hb_004635_040 Hb_005144_100--Hb_004635_040 Hb_001799_090 Hb_001799_090 Hb_005144_100--Hb_001799_090 Hb_002217_210--Hb_004635_040 Hb_002044_110 Hb_002044_110 Hb_002217_210--Hb_002044_110 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_010614_020 Hb_010614_020 Hb_002217_210--Hb_010614_020 Hb_002217_210--Hb_008959_050 Hb_001998_260--Hb_001799_090 Hb_028008_030 Hb_028008_030 Hb_001998_260--Hb_028008_030 Hb_001998_260--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001998_260--Hb_002289_110 Hb_039496_010 Hb_039496_010 Hb_001998_260--Hb_039496_010 Hb_000676_170 Hb_000676_170 Hb_003266_060--Hb_000676_170 Hb_001006_030 Hb_001006_030 Hb_003266_060--Hb_001006_030 Hb_000069_520 Hb_000069_520 Hb_003266_060--Hb_000069_520 Hb_000417_350 Hb_000417_350 Hb_003266_060--Hb_000417_350 Hb_010573_040 Hb_010573_040 Hb_008959_050--Hb_010573_040 Hb_002894_040 Hb_002894_040 Hb_008959_050--Hb_002894_040 Hb_008959_050--Hb_002044_110 Hb_008959_050--Hb_010614_020 Hb_004218_220 Hb_004218_220 Hb_008959_050--Hb_004218_220 Hb_004635_040--Hb_010614_020 Hb_007403_010 Hb_007403_010 Hb_004635_040--Hb_007403_010 Hb_004635_040--Hb_002044_110 Hb_036356_010 Hb_036356_010 Hb_004635_040--Hb_036356_010 Hb_001799_090--Hb_002289_110 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_001799_090--Hb_028008_030 Hb_001799_090--Hb_000069_520 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.51182 2.38633 9.20953 0.0339209 0.0190641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.70355 0.201781

CAGE analysis