Hb_000069_520

Information

Type -
Description -
Location Contig69: 570852-571848
Sequence    

Annotation

kegg
ID rcu:RCOM_0719860
description triptychon and cpc, putative
nr
ID XP_012083240.1
description PREDICTED: transcription factor TRY-like [Jatropha curcas]
swissprot
ID O22059
description Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1
trembl
ID B9SBK5
description Triptychon and cpc, putative OS=Ricinus communis GN=RCOM_0719860 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54254: 571002-571831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_520 0.0 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
2 Hb_001006_030 0.1066185976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002028_160 0.1104273915 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
4 Hb_001799_090 0.1119052559 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
5 Hb_000676_170 0.1141767441 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
6 Hb_002289_110 0.1148766085 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
7 Hb_002374_060 0.1174649993 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000070_070 0.1176216924 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
9 Hb_001856_160 0.1176435778 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002236_010 0.1235844232 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
11 Hb_003266_060 0.1238826716 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
12 Hb_000032_340 0.1251211541 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
13 Hb_005144_100 0.126107246 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
14 Hb_007625_030 0.1272830494 - - unknown [Medicago truncatula]
15 Hb_005679_120 0.1372674413 - - hypothetical protein RCOM_0284080 [Ricinus communis]
16 Hb_005489_120 0.1372994508 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
17 Hb_000479_230 0.1373243078 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
18 Hb_001998_260 0.1374277945 - - cytochrome P450, putative [Ricinus communis]
19 Hb_029866_080 0.1396153131 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
20 Hb_003376_300 0.139671236 - - Aquaporin PIP2.2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_520 Hb_000069_520 Hb_001006_030 Hb_001006_030 Hb_000069_520--Hb_001006_030 Hb_002028_160 Hb_002028_160 Hb_000069_520--Hb_002028_160 Hb_001799_090 Hb_001799_090 Hb_000069_520--Hb_001799_090 Hb_000676_170 Hb_000676_170 Hb_000069_520--Hb_000676_170 Hb_002289_110 Hb_002289_110 Hb_000069_520--Hb_002289_110 Hb_002374_060 Hb_002374_060 Hb_000069_520--Hb_002374_060 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_003266_060 Hb_003266_060 Hb_001006_030--Hb_003266_060 Hb_001006_030--Hb_002289_110 Hb_001006_030--Hb_000676_170 Hb_003376_300 Hb_003376_300 Hb_002028_160--Hb_003376_300 Hb_011129_020 Hb_011129_020 Hb_002028_160--Hb_011129_020 Hb_000317_230 Hb_000317_230 Hb_002028_160--Hb_000317_230 Hb_000454_200 Hb_000454_200 Hb_002028_160--Hb_000454_200 Hb_000832_280 Hb_000832_280 Hb_002028_160--Hb_000832_280 Hb_001799_090--Hb_002289_110 Hb_001998_260 Hb_001998_260 Hb_001799_090--Hb_001998_260 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_028008_030 Hb_028008_030 Hb_001799_090--Hb_028008_030 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120 Hb_000676_170--Hb_002374_060 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_000676_170--Hb_003266_060 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_002289_110--Hb_001856_160 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_010162_010 Hb_010162_010 Hb_002374_060--Hb_010162_010 Hb_016120_020 Hb_016120_020 Hb_002374_060--Hb_016120_020 Hb_000856_250 Hb_000856_250 Hb_002374_060--Hb_000856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.9249 5.23859 23.4269 0.0786994 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187533 0.368499 0.129821 17.1183 2.58722

CAGE analysis