Hb_002374_060

Information

Type -
Description -
Location Contig2374: 45977-48293
Sequence    

Annotation

kegg
ID rcu:RCOM_0562460
description amino acid transporter, putative
nr
ID XP_002520322.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q39134
description Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2
trembl
ID B9S2V3
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0562460 PE=4 SV=1
Gene Ontology
ID GO:0005737
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24842: 45773-48265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_060 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000676_170 0.0967116918 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
3 Hb_010162_010 0.1030926902 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
4 Hb_001006_030 0.1174117542 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000069_520 0.1174649993 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
6 Hb_016120_020 0.1260910979 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
7 Hb_000856_250 0.135273116 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_012516_030 0.1410576109 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
9 Hb_000032_340 0.142499887 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
10 Hb_029866_080 0.1437024409 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_001610_060 0.1498053453 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
12 Hb_000070_070 0.1509190772 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
13 Hb_002289_110 0.1516214121 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
14 Hb_003964_060 0.1517568501 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
15 Hb_000866_320 0.1551274927 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_003371_040 0.1608156669 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
17 Hb_001799_090 0.1620290756 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
18 Hb_003266_060 0.1629105695 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
19 Hb_000749_160 0.1645193532 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_002461_070 0.1656990275 - - gibberellin 2-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_060 Hb_002374_060 Hb_000676_170 Hb_000676_170 Hb_002374_060--Hb_000676_170 Hb_010162_010 Hb_010162_010 Hb_002374_060--Hb_010162_010 Hb_001006_030 Hb_001006_030 Hb_002374_060--Hb_001006_030 Hb_000069_520 Hb_000069_520 Hb_002374_060--Hb_000069_520 Hb_016120_020 Hb_016120_020 Hb_002374_060--Hb_016120_020 Hb_000856_250 Hb_000856_250 Hb_002374_060--Hb_000856_250 Hb_005489_120 Hb_005489_120 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_000676_170--Hb_000069_520 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_003266_060 Hb_003266_060 Hb_000676_170--Hb_003266_060 Hb_156696_010 Hb_156696_010 Hb_010162_010--Hb_156696_010 Hb_002461_070 Hb_002461_070 Hb_010162_010--Hb_002461_070 Hb_003371_040 Hb_003371_040 Hb_010162_010--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_010162_010--Hb_006314_020 Hb_010162_010--Hb_001006_030 Hb_001006_030--Hb_000069_520 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_001006_030--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001006_030--Hb_002289_110 Hb_001006_030--Hb_000676_170 Hb_002028_160 Hb_002028_160 Hb_000069_520--Hb_002028_160 Hb_001799_090 Hb_001799_090 Hb_000069_520--Hb_001799_090 Hb_000069_520--Hb_002289_110 Hb_003504_010 Hb_003504_010 Hb_016120_020--Hb_003504_010 Hb_016120_020--Hb_000856_250 Hb_001610_060 Hb_001610_060 Hb_016120_020--Hb_001610_060 Hb_001115_010 Hb_001115_010 Hb_016120_020--Hb_001115_010 Hb_000032_340 Hb_000032_340 Hb_016120_020--Hb_000032_340 Hb_000856_250--Hb_000032_340 Hb_000070_070 Hb_000070_070 Hb_000856_250--Hb_000070_070 Hb_010417_090 Hb_010417_090 Hb_000856_250--Hb_010417_090 Hb_000203_150 Hb_000203_150 Hb_000856_250--Hb_000203_150 Hb_002236_010 Hb_002236_010 Hb_000856_250--Hb_002236_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309686 24.5232 10.6384 76.6037 0.111696 0.175417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.868258 1.10783 2.44856 45.0153 4.4047

CAGE analysis