Hb_002461_070

Information

Type -
Description -
Location Contig2461: 73423-75755
Sequence    

Annotation

kegg
ID rcu:RCOM_1345790
description gibberellin 2-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002515236.1
description gibberellin 2-oxidase, putative [Ricinus communis]
swissprot
ID Q9XHM5
description Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1
trembl
ID B9RN97
description Gibberellin 2-oxidase, putative OS=Ricinus communis GN=RCOM_1345790 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002461_070 0.0 - - gibberellin 2-oxidase, putative [Ricinus communis]
2 Hb_010162_010 0.1260081768 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
3 Hb_156696_010 0.146812329 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_001006_030 0.148148265 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008001_020 0.1627715237 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
6 Hb_001821_030 0.1646112014 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
7 Hb_002374_060 0.1656990275 - - amino acid transporter, putative [Ricinus communis]
8 Hb_136884_010 0.1660469092 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_002289_110 0.1669355964 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
10 Hb_001814_080 0.1680685653 - - PREDICTED: oleosin 1-like [Jatropha curcas]
11 Hb_001799_090 0.169605706 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
12 Hb_028008_030 0.1722140716 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
13 Hb_000081_030 0.1773944032 - - BnaC09g05810D [Brassica napus]
14 Hb_029866_080 0.1811855021 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_001862_170 0.1826382389 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001998_260 0.1833819718 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000069_520 0.1873168287 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
18 Hb_001976_120 0.1888947564 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_001493_170 0.1889341901 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
20 Hb_001369_530 0.1909806858 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002461_070 Hb_002461_070 Hb_010162_010 Hb_010162_010 Hb_002461_070--Hb_010162_010 Hb_156696_010 Hb_156696_010 Hb_002461_070--Hb_156696_010 Hb_001006_030 Hb_001006_030 Hb_002461_070--Hb_001006_030 Hb_008001_020 Hb_008001_020 Hb_002461_070--Hb_008001_020 Hb_001821_030 Hb_001821_030 Hb_002461_070--Hb_001821_030 Hb_002374_060 Hb_002374_060 Hb_002461_070--Hb_002374_060 Hb_010162_010--Hb_002374_060 Hb_010162_010--Hb_156696_010 Hb_003371_040 Hb_003371_040 Hb_010162_010--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_010162_010--Hb_006314_020 Hb_010162_010--Hb_001006_030 Hb_156696_010--Hb_001006_030 Hb_111147_010 Hb_111147_010 Hb_156696_010--Hb_111147_010 Hb_001998_260 Hb_001998_260 Hb_156696_010--Hb_001998_260 Hb_028008_030 Hb_028008_030 Hb_156696_010--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001006_030--Hb_000069_520 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_003266_060 Hb_003266_060 Hb_001006_030--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001006_030--Hb_002289_110 Hb_000676_170 Hb_000676_170 Hb_001006_030--Hb_000676_170 Hb_008001_020--Hb_028008_030 Hb_000586_100 Hb_000586_100 Hb_008001_020--Hb_000586_100 Hb_094637_010 Hb_094637_010 Hb_008001_020--Hb_094637_010 Hb_000286_030 Hb_000286_030 Hb_008001_020--Hb_000286_030 Hb_028207_030 Hb_028207_030 Hb_008001_020--Hb_028207_030 Hb_008001_020--Hb_001998_260 Hb_001369_530 Hb_001369_530 Hb_001821_030--Hb_001369_530 Hb_001821_030--Hb_006314_020 Hb_000521_350 Hb_000521_350 Hb_001821_030--Hb_000521_350 Hb_148817_010 Hb_148817_010 Hb_001821_030--Hb_148817_010 Hb_004875_040 Hb_004875_040 Hb_001821_030--Hb_004875_040 Hb_000081_030 Hb_000081_030 Hb_001821_030--Hb_000081_030 Hb_002374_060--Hb_000676_170 Hb_002374_060--Hb_000069_520 Hb_016120_020 Hb_016120_020 Hb_002374_060--Hb_016120_020 Hb_000856_250 Hb_000856_250 Hb_002374_060--Hb_000856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.71604 0.0668171 1.32284 0.0412245 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503625 0 0.0729318 1.1149 0.0810616

CAGE analysis