Hb_003371_040

Information

Type -
Description -
Location Contig3371: 15456-15734
Sequence    

Annotation

kegg
ID rcu:RCOM_1775700
description hypothetical protein
nr
ID XP_012092598.1
description PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9REM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1
Gene Ontology
ID GO:0005783
description PREDICTED: uncharacterized protein LOC105650327

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35279: 15508-15853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_040 0.0 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
2 Hb_006314_020 0.0667466325 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
3 Hb_002876_190 0.0811809583 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
4 Hb_001775_130 0.0888668364 - - Prephenate dehydratase [Hevea brasiliensis]
5 Hb_000429_030 0.0947154534 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_003171_070 0.0965075602 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
7 Hb_001856_150 0.1044300552 - - -
8 Hb_170861_010 0.1153792292 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_039096_010 0.1218308308 - - unknown [Populus trichocarpa]
10 Hb_000106_060 0.1251038689 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
11 Hb_000098_210 0.1252264699 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
12 Hb_005333_120 0.1283750553 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
13 Hb_001821_030 0.1305135028 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
14 Hb_004875_040 0.1310987224 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
15 Hb_113945_010 0.1315115837 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_007161_020 0.1336507359 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
17 Hb_010162_010 0.135748096 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
18 Hb_080068_010 0.1362586811 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
19 Hb_148817_010 0.1383298556 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
20 Hb_000070_070 0.1387932695 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_040 Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_003371_040--Hb_006314_020 Hb_002876_190 Hb_002876_190 Hb_003371_040--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_003371_040--Hb_001775_130 Hb_000429_030 Hb_000429_030 Hb_003371_040--Hb_000429_030 Hb_003171_070 Hb_003171_070 Hb_003371_040--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_003371_040--Hb_001856_150 Hb_006314_020--Hb_001856_150 Hb_000230_160 Hb_000230_160 Hb_006314_020--Hb_000230_160 Hb_006314_020--Hb_003171_070 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_000081_030 Hb_000081_030 Hb_006314_020--Hb_000081_030 Hb_002876_190--Hb_001775_130 Hb_039096_010 Hb_039096_010 Hb_002876_190--Hb_039096_010 Hb_113945_010 Hb_113945_010 Hb_002876_190--Hb_113945_010 Hb_000106_060 Hb_000106_060 Hb_002876_190--Hb_000106_060 Hb_002876_190--Hb_006314_020 Hb_001775_130--Hb_039096_010 Hb_001775_130--Hb_003171_070 Hb_001775_130--Hb_006314_020 Hb_001775_130--Hb_001856_150 Hb_000429_030--Hb_003171_070 Hb_081191_010 Hb_081191_010 Hb_000429_030--Hb_081191_010 Hb_170861_010 Hb_170861_010 Hb_000429_030--Hb_170861_010 Hb_007161_020 Hb_007161_020 Hb_000429_030--Hb_007161_020 Hb_009615_030 Hb_009615_030 Hb_000429_030--Hb_009615_030 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_003171_070--Hb_001856_150 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.96966 0.849718 14.6966 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.84125 1.0556

CAGE analysis