Hb_039096_010

Information

Type -
Description -
Location Contig39096: 3-815
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10480g
description POPTRDRAFT_551646; chloroplast nucleoid DNA-binding family protein
nr
ID ABK95290.1
description unknown [Populus trichocarpa]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID A9PFY7
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039096_010 0.0 - - unknown [Populus trichocarpa]
2 Hb_002876_190 0.0692768172 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
3 Hb_001775_130 0.0734428335 - - Prephenate dehydratase [Hevea brasiliensis]
4 Hb_113945_010 0.0836490244 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_000106_060 0.0847822399 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
6 Hb_000934_180 0.0947332922 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
7 Hb_170861_010 0.0959132781 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_003371_040 0.1218308308 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
9 Hb_007161_020 0.1225159263 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
10 Hb_003435_070 0.1288569891 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
11 Hb_005333_120 0.1342685887 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
12 Hb_003171_070 0.1350755648 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
13 Hb_000429_030 0.1421871388 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_000011_320 0.1485522949 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
15 Hb_011139_010 0.1500596601 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_008727_040 0.1501912889 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001856_150 0.1525671433 - - -
18 Hb_006314_020 0.1547659119 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
19 Hb_085315_010 0.1557670687 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
20 Hb_182831_020 0.1618864431 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_039096_010 Hb_039096_010 Hb_002876_190 Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_039096_010--Hb_001775_130 Hb_113945_010 Hb_113945_010 Hb_039096_010--Hb_113945_010 Hb_000106_060 Hb_000106_060 Hb_039096_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_039096_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_039096_010--Hb_170861_010 Hb_002876_190--Hb_001775_130 Hb_003371_040 Hb_003371_040 Hb_002876_190--Hb_003371_040 Hb_002876_190--Hb_113945_010 Hb_002876_190--Hb_000106_060 Hb_006314_020 Hb_006314_020 Hb_002876_190--Hb_006314_020 Hb_001775_130--Hb_003371_040 Hb_003171_070 Hb_003171_070 Hb_001775_130--Hb_003171_070 Hb_001775_130--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_001775_130--Hb_001856_150 Hb_113945_010--Hb_170861_010 Hb_113945_010--Hb_000106_060 Hb_113945_010--Hb_000934_180 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_000106_060--Hb_170861_010 Hb_000106_060--Hb_000934_180 Hb_000106_060--Hb_001775_130 Hb_000934_180--Hb_170861_010 Hb_120357_010 Hb_120357_010 Hb_000934_180--Hb_120357_010 Hb_000934_180--Hb_002876_190 Hb_170861_010--Hb_120357_010 Hb_170861_010--Hb_002876_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179689 7.03785 3.12788 67.8334 0.328988 0.0852907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.188203 49.677 10.5484

CAGE analysis