Hb_003171_070

Information

Type -
Description -
Location Contig3171: 75482-78006
Sequence    

Annotation

kegg
ID cit:102615021
description protein TRANSPARENT TESTA 12-like
nr
ID XP_006495081.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067KTR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02641 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33430: 75807-77308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003171_070 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
2 Hb_000676_380 0.0906181137 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_006314_020 0.0931240046 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
4 Hb_001856_150 0.0939377813 - - -
5 Hb_003371_040 0.0965075602 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
6 Hb_161346_010 0.0999285414 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
7 Hb_000429_030 0.1005246506 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_001775_130 0.1015752548 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_020805_110 0.1050252656 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
10 Hb_009711_040 0.1101275714 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_182831_020 0.1102903753 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_002876_190 0.1103021979 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
13 Hb_004875_040 0.1133673697 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
14 Hb_000098_210 0.1166246057 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
15 Hb_000417_350 0.1235965493 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003435_070 0.1311717675 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
17 Hb_005333_120 0.1314008349 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
18 Hb_170861_010 0.1335195873 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_003090_230 0.1343042172 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008727_030 0.134647162 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003171_070 Hb_003171_070 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_003090_230 Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_020805_110 Hb_020805_110 Hb_000676_380--Hb_020805_110 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_009711_040 Hb_009711_040 Hb_000676_380--Hb_009711_040 Hb_006314_020--Hb_001856_150 Hb_006314_020--Hb_003371_040 Hb_000230_160 Hb_000230_160 Hb_006314_020--Hb_000230_160 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_000081_030 Hb_000081_030 Hb_006314_020--Hb_000081_030 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_001856_150--Hb_004875_040 Hb_002876_190 Hb_002876_190 Hb_003371_040--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_003371_040--Hb_001775_130 Hb_003371_040--Hb_000429_030 Hb_003371_040--Hb_001856_150 Hb_182831_020 Hb_182831_020 Hb_161346_010--Hb_182831_020 Hb_131029_010 Hb_131029_010 Hb_161346_010--Hb_131029_010 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020 Hb_081191_010 Hb_081191_010 Hb_000429_030--Hb_081191_010 Hb_170861_010 Hb_170861_010 Hb_000429_030--Hb_170861_010 Hb_007161_020 Hb_007161_020 Hb_000429_030--Hb_007161_020 Hb_009615_030 Hb_009615_030 Hb_000429_030--Hb_009615_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.00874 0.603778 8.24734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.15467 0.33923

CAGE analysis