Hb_003789_020

Information

Type -
Description -
Location Contig3789: 20290-21299
Sequence    

Annotation

kegg
ID tcc:TCM_026075
description RmlC-like cupins superfamily protein
nr
ID KDP23769.1
description hypothetical protein JCGZ_23602 [Jatropha curcas]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID A0A067JW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23602 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38533: 20833-21175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003789_020 0.0 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
2 Hb_011139_010 0.0852609504 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_008727_030 0.1062876186 - - conserved hypothetical protein [Ricinus communis]
4 Hb_030394_050 0.108807589 - - lipid binding protein, putative [Ricinus communis]
5 Hb_182831_020 0.1096020578 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_001360_060 0.1218603483 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
7 Hb_005144_180 0.123774783 - - PREDICTED: protein enabled homolog [Populus euphratica]
8 Hb_161346_010 0.1299438314 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
9 Hb_081282_010 0.1377813342 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
10 Hb_021418_010 0.1506627167 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
11 Hb_000676_380 0.1578890453 - - cytochrome P450 family protein [Populus trichocarpa]
12 Hb_011452_020 0.1608734271 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
13 Hb_003171_070 0.163172838 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
14 Hb_003090_230 0.1655497266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003177_100 0.1656300524 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
16 Hb_012368_080 0.1668361023 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
17 Hb_000380_210 0.1677427487 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
18 Hb_001596_030 0.1696138654 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
19 Hb_005503_010 0.1699869129 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
20 Hb_003177_080 0.170866305 - - hypothetical protein L484_016032 [Morus notabilis]

Gene co-expression network

sample Hb_003789_020 Hb_003789_020 Hb_011139_010 Hb_011139_010 Hb_003789_020--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_003789_020--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_182831_020 Hb_182831_020 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_008727_030 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_008727_030--Hb_005144_180 Hb_030394_050--Hb_182831_020 Hb_030394_050--Hb_001360_060 Hb_030394_050--Hb_161346_010 Hb_030394_050--Hb_005144_180 Hb_182831_020--Hb_161346_010 Hb_003171_070 Hb_003171_070 Hb_182831_020--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380 Hb_003177_080 Hb_003177_080 Hb_001360_060--Hb_003177_080 Hb_003097_200 Hb_003097_200 Hb_001360_060--Hb_003097_200 Hb_156499_010 Hb_156499_010 Hb_001360_060--Hb_156499_010 Hb_000797_030 Hb_000797_030 Hb_001360_060--Hb_000797_030 Hb_001360_060--Hb_011139_010 Hb_005144_180--Hb_118707_020 Hb_001758_120 Hb_001758_120 Hb_005144_180--Hb_001758_120 Hb_000380_210 Hb_000380_210 Hb_005144_180--Hb_000380_210 Hb_003090_230 Hb_003090_230 Hb_005144_180--Hb_003090_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.233337 1.31752 14.4389 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 19.7207 1.05677

CAGE analysis