Hb_001360_060

Information

Type -
Description -
Location Contig1360: 96015-97978
Sequence    

Annotation

kegg
ID rcu:RCOM_1353970
description Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative (EC:2.4.1.207)
nr
ID XP_012082446.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
swissprot
ID Q9SJL9
description Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1
trembl
ID A0A067KA64
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_16564 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_060 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
2 Hb_003177_080 0.0823601005 - - hypothetical protein L484_016032 [Morus notabilis]
3 Hb_003789_020 0.1218603483 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_003097_200 0.1291540998 - - conserved hypothetical protein [Ricinus communis]
5 Hb_156499_010 0.1321092055 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
6 Hb_000797_030 0.1419133156 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
7 Hb_011139_010 0.1432089602 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_003893_100 0.1462216834 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
9 Hb_005503_010 0.1485658046 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
10 Hb_030394_050 0.1511057929 - - lipid binding protein, putative [Ricinus communis]
11 Hb_008727_030 0.152487984 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000207_340 0.1584170384 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
13 Hb_004316_130 0.1662277247 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
14 Hb_005144_180 0.1662961466 - - PREDICTED: protein enabled homolog [Populus euphratica]
15 Hb_012368_080 0.1755567748 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
16 Hb_000138_080 0.177295582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000163_010 0.1778924449 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
18 Hb_000297_180 0.1811943476 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
19 Hb_002475_070 0.1816680839 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
20 Hb_011452_020 0.1860585116 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001360_060 Hb_001360_060 Hb_003177_080 Hb_003177_080 Hb_001360_060--Hb_003177_080 Hb_003789_020 Hb_003789_020 Hb_001360_060--Hb_003789_020 Hb_003097_200 Hb_003097_200 Hb_001360_060--Hb_003097_200 Hb_156499_010 Hb_156499_010 Hb_001360_060--Hb_156499_010 Hb_000797_030 Hb_000797_030 Hb_001360_060--Hb_000797_030 Hb_011139_010 Hb_011139_010 Hb_001360_060--Hb_011139_010 Hb_003177_080--Hb_156499_010 Hb_000207_340 Hb_000207_340 Hb_003177_080--Hb_000207_340 Hb_003177_080--Hb_003097_200 Hb_000163_010 Hb_000163_010 Hb_003177_080--Hb_000163_010 Hb_000138_080 Hb_000138_080 Hb_003177_080--Hb_000138_080 Hb_003789_020--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_003789_020--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_182831_020 Hb_182831_020 Hb_003789_020--Hb_182831_020 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180 Hb_003097_200--Hb_000797_030 Hb_003893_100 Hb_003893_100 Hb_003097_200--Hb_003893_100 Hb_000911_050 Hb_000911_050 Hb_003097_200--Hb_000911_050 Hb_006637_040 Hb_006637_040 Hb_003097_200--Hb_006637_040 Hb_004316_130 Hb_004316_130 Hb_003097_200--Hb_004316_130 Hb_001758_120 Hb_001758_120 Hb_003097_200--Hb_001758_120 Hb_156499_010--Hb_000138_080 Hb_105134_010 Hb_105134_010 Hb_156499_010--Hb_105134_010 Hb_156499_010--Hb_000207_340 Hb_009113_010 Hb_009113_010 Hb_156499_010--Hb_009113_010 Hb_000797_030--Hb_003893_100 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_006637_040 Hb_000797_030--Hb_004316_130 Hb_000797_030--Hb_001758_120 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_008727_030 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0239142 0.255588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.483591 0.0598496

CAGE analysis