Hb_000207_340

Information

Type transcription factor
Description TF Family: GRAS
Location Contig207: 435491-436864
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11930g
description hypothetical protein
nr
ID XP_006376315.1
description hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
swissprot
ID Q9M384
description Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1
trembl
ID B9MW61
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11930g PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_340 0.0 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
2 Hb_003177_080 0.1146198467 - - hypothetical protein L484_016032 [Morus notabilis]
3 Hb_000797_030 0.1197624122 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
4 Hb_003097_200 0.1224294593 - - conserved hypothetical protein [Ricinus communis]
5 Hb_156499_010 0.1226308084 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
6 Hb_000911_050 0.1231383893 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
7 Hb_036069_020 0.1238298518 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
8 Hb_009113_010 0.1297985639 - - Chalcone synthase, putative [Ricinus communis]
9 Hb_000138_080 0.1450555446 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002900_040 0.1484402054 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
11 Hb_003893_100 0.1503222703 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
12 Hb_188681_010 0.1540880184 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
13 Hb_002475_070 0.1552173097 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
14 Hb_004316_130 0.1556694272 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
15 Hb_001360_060 0.1584170384 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
16 Hb_031931_030 0.1592101944 - - lipid binding protein, putative [Ricinus communis]
17 Hb_130563_010 0.1651222626 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
18 Hb_002566_010 0.1662453345 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
19 Hb_105134_010 0.1669008467 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
20 Hb_144783_010 0.1672212751 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000207_340 Hb_000207_340 Hb_003177_080 Hb_003177_080 Hb_000207_340--Hb_003177_080 Hb_000797_030 Hb_000797_030 Hb_000207_340--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_000207_340--Hb_003097_200 Hb_156499_010 Hb_156499_010 Hb_000207_340--Hb_156499_010 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_001360_060 Hb_001360_060 Hb_003177_080--Hb_001360_060 Hb_003177_080--Hb_156499_010 Hb_003177_080--Hb_003097_200 Hb_000163_010 Hb_000163_010 Hb_003177_080--Hb_000163_010 Hb_000138_080 Hb_000138_080 Hb_003177_080--Hb_000138_080 Hb_000797_030--Hb_003097_200 Hb_003893_100 Hb_003893_100 Hb_000797_030--Hb_003893_100 Hb_000797_030--Hb_000911_050 Hb_006637_040 Hb_006637_040 Hb_000797_030--Hb_006637_040 Hb_004316_130 Hb_004316_130 Hb_000797_030--Hb_004316_130 Hb_001758_120 Hb_001758_120 Hb_000797_030--Hb_001758_120 Hb_003097_200--Hb_003893_100 Hb_003097_200--Hb_000911_050 Hb_003097_200--Hb_006637_040 Hb_003097_200--Hb_004316_130 Hb_003097_200--Hb_001758_120 Hb_156499_010--Hb_000138_080 Hb_105134_010 Hb_105134_010 Hb_156499_010--Hb_105134_010 Hb_156499_010--Hb_001360_060 Hb_009113_010 Hb_009113_010 Hb_156499_010--Hb_009113_010 Hb_000911_050--Hb_036069_020 Hb_001377_010 Hb_001377_010 Hb_000911_050--Hb_001377_010 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_000911_050--Hb_006637_040 Hb_130563_010 Hb_130563_010 Hb_036069_020--Hb_130563_010 Hb_036069_020--Hb_001758_120 Hb_036069_020--Hb_001377_010 Hb_036069_020--Hb_000797_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0276785 0.0112955 0.31481 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.945698 0.170035

CAGE analysis