Hb_000934_180

Information

Type -
Description -
Location Contig934: 140884-145070
Sequence    

Annotation

kegg
ID rcu:RCOM_0138600
description Auxin efflux carrier component, putative
nr
ID KDP43051.1
description hypothetical protein JCGZ_25237 [Jatropha curcas]
swissprot
ID Q9SQH6
description Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2
trembl
ID A0A067L3K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25237 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable auxin efflux carrier component 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_180 0.0 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
2 Hb_113945_010 0.0866757484 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_170861_010 0.0881157675 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_039096_010 0.0947332922 - - unknown [Populus trichocarpa]
5 Hb_000106_060 0.098474275 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
6 Hb_120357_010 0.1209860642 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_002876_190 0.134554959 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
8 Hb_049438_020 0.1358575571 - - PREDICTED: peroxidase 20 [Jatropha curcas]
9 Hb_000011_320 0.1358582463 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
10 Hb_007161_020 0.1405981197 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
11 Hb_001775_130 0.1408329803 - - Prephenate dehydratase [Hevea brasiliensis]
12 Hb_000561_040 0.1483908592 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_000389_100 0.1504265428 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
14 Hb_085315_010 0.1611820908 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
15 Hb_008727_040 0.1612506767 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000163_010 0.161677187 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
17 Hb_003304_090 0.1622754189 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
18 Hb_159809_080 0.1663407128 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_008304_050 0.166758289 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
20 Hb_011849_020 0.1677290297 - - dioxygenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000934_180 Hb_000934_180 Hb_113945_010 Hb_113945_010 Hb_000934_180--Hb_113945_010 Hb_170861_010 Hb_170861_010 Hb_000934_180--Hb_170861_010 Hb_039096_010 Hb_039096_010 Hb_000934_180--Hb_039096_010 Hb_000106_060 Hb_000106_060 Hb_000934_180--Hb_000106_060 Hb_120357_010 Hb_120357_010 Hb_000934_180--Hb_120357_010 Hb_002876_190 Hb_002876_190 Hb_000934_180--Hb_002876_190 Hb_113945_010--Hb_170861_010 Hb_113945_010--Hb_000106_060 Hb_113945_010--Hb_039096_010 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_113945_010--Hb_002876_190 Hb_170861_010--Hb_000106_060 Hb_170861_010--Hb_039096_010 Hb_170861_010--Hb_120357_010 Hb_170861_010--Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_039096_010--Hb_001775_130 Hb_039096_010--Hb_000106_060 Hb_000106_060--Hb_002876_190 Hb_000106_060--Hb_001775_130 Hb_000561_040 Hb_000561_040 Hb_120357_010--Hb_000561_040 Hb_049438_020 Hb_049438_020 Hb_120357_010--Hb_049438_020 Hb_004397_010 Hb_004397_010 Hb_120357_010--Hb_004397_010 Hb_120357_010--Hb_113945_010 Hb_002876_190--Hb_001775_130 Hb_003371_040 Hb_003371_040 Hb_002876_190--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_002876_190--Hb_006314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237783 0.321614 4.90568 0.00807549 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.019591 0 0 3.02012 0.915403

CAGE analysis