Hb_000561_040

Information

Type -
Description -
Location Contig561: 43173-43751
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04650g
description POPTRDRAFT_547643; disease resistance-responsive family protein
nr
ID XP_012093324.1
description PREDICTED: dirigent protein 19-like [Jatropha curcas]
swissprot
ID Q9C891
description Dirigent protein 20 OS=Arabidopsis thaliana GN=DIR20 PE=2 SV=1
trembl
ID A0A067LIA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48786: 43117-43914
cDNA
(Sanger)
(ID:Location)		 013_G17.ab1: 43117-43847 , 049_J20.ab1: 43117-43834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000561_040 0.0 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
2 Hb_000389_100 0.0798675718 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
3 Hb_002869_090 0.0841323606 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
4 Hb_000659_050 0.0907560849 - - PREDICTED: basic blue protein-like [Jatropha curcas]
5 Hb_120357_010 0.0978485141 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_027400_020 0.1033763585 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
7 Hb_049438_020 0.1049615546 - - PREDICTED: peroxidase 20 [Jatropha curcas]
8 Hb_002616_020 0.1145783795 - - PREDICTED: peroxidase 3 [Jatropha curcas]
9 Hb_000011_320 0.1146442173 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
10 Hb_000327_100 0.1149818442 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
11 Hb_001675_020 0.1171755521 - - -
12 Hb_000015_190 0.117610929 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
13 Hb_008304_050 0.1196788687 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
14 Hb_003304_090 0.1220217493 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
15 Hb_000419_140 0.1229536078 - - Aquaporin PIP2.1, putative [Ricinus communis]
16 Hb_000076_280 0.127486651 - - PREDICTED: pectinesterase-like [Populus euphratica]
17 Hb_000910_030 0.1276802045 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003607_090 0.132580664 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_000069_150 0.1358455531 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
20 Hb_001856_260 0.1413509628 - - hypothetical protein JCGZ_09061 [Jatropha curcas]

Gene co-expression network

sample Hb_000561_040 Hb_000561_040 Hb_000389_100 Hb_000389_100 Hb_000561_040--Hb_000389_100 Hb_002869_090 Hb_002869_090 Hb_000561_040--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000561_040--Hb_000659_050 Hb_120357_010 Hb_120357_010 Hb_000561_040--Hb_120357_010 Hb_027400_020 Hb_027400_020 Hb_000561_040--Hb_027400_020 Hb_049438_020 Hb_049438_020 Hb_000561_040--Hb_049438_020 Hb_008304_050 Hb_008304_050 Hb_000389_100--Hb_008304_050 Hb_002566_020 Hb_002566_020 Hb_000389_100--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_000389_100--Hb_009456_010 Hb_031224_010 Hb_031224_010 Hb_000389_100--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_000389_100--Hb_002783_180 Hb_002869_090--Hb_000659_050 Hb_002616_020 Hb_002616_020 Hb_002869_090--Hb_002616_020 Hb_000327_100 Hb_000327_100 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_002869_090--Hb_027400_020 Hb_000910_030 Hb_000910_030 Hb_000659_050--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_000659_050--Hb_000344_030 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_000659_050--Hb_002616_020 Hb_120357_010--Hb_049438_020 Hb_170861_010 Hb_170861_010 Hb_120357_010--Hb_170861_010 Hb_004397_010 Hb_004397_010 Hb_120357_010--Hb_004397_010 Hb_113945_010 Hb_113945_010 Hb_120357_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_120357_010--Hb_000934_180 Hb_000076_280 Hb_000076_280 Hb_027400_020--Hb_000076_280 Hb_027400_020--Hb_002616_020 Hb_000419_140 Hb_000419_140 Hb_027400_020--Hb_000419_140 Hb_001769_070 Hb_001769_070 Hb_027400_020--Hb_001769_070 Hb_000329_010 Hb_000329_010 Hb_027400_020--Hb_000329_010 Hb_049438_020--Hb_000389_100 Hb_001856_260 Hb_001856_260 Hb_049438_020--Hb_001856_260 Hb_162815_010 Hb_162815_010 Hb_049438_020--Hb_162815_010 Hb_000685_100 Hb_000685_100 Hb_049438_020--Hb_000685_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86796 28.9824 63.8382 576.941 0.710241 1.22674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59782 0.669683 0.436841 180.903 115.954

CAGE analysis