Hb_000685_100

Information

Type -
Description -
Location Contig685: 96849-97187
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10630g
description POPTRDRAFT_751208; hypothetical protein
nr
ID XP_002299474.1
description hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GL58
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_100 0.0 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
2 Hb_007237_060 0.1091150561 - - -
3 Hb_005116_040 0.1104090826 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
4 Hb_049438_020 0.1231581075 - - PREDICTED: peroxidase 20 [Jatropha curcas]
5 Hb_000034_060 0.1252046189 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
6 Hb_001856_260 0.1285429935 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
7 Hb_000237_060 0.1479318091 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
8 Hb_001675_020 0.148841791 - - -
9 Hb_001144_030 0.1535786596 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
10 Hb_159809_080 0.1600799873 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_001210_120 0.1604012772 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
12 Hb_000561_040 0.1606445394 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_000659_050 0.1644873983 - - PREDICTED: basic blue protein-like [Jatropha curcas]
14 Hb_000014_200 0.1667245479 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
15 Hb_000327_100 0.1671674312 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
16 Hb_003212_020 0.1689071759 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
17 Hb_000910_030 0.171857749 - - conserved hypothetical protein [Ricinus communis]
18 Hb_120357_010 0.1727107503 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_000389_100 0.1731034264 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
20 Hb_146036_010 0.1756693626 - - hypothetical protein B456_005G052500 [Gossypium raimondii]

Gene co-expression network

sample Hb_000685_100 Hb_000685_100 Hb_007237_060 Hb_007237_060 Hb_000685_100--Hb_007237_060 Hb_005116_040 Hb_005116_040 Hb_000685_100--Hb_005116_040 Hb_049438_020 Hb_049438_020 Hb_000685_100--Hb_049438_020 Hb_000034_060 Hb_000034_060 Hb_000685_100--Hb_000034_060 Hb_001856_260 Hb_001856_260 Hb_000685_100--Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_000685_100--Hb_000237_060 Hb_007237_060--Hb_001856_260 Hb_001675_020 Hb_001675_020 Hb_007237_060--Hb_001675_020 Hb_000327_100 Hb_000327_100 Hb_007237_060--Hb_000327_100 Hb_000086_530 Hb_000086_530 Hb_007237_060--Hb_000086_530 Hb_007237_060--Hb_000237_060 Hb_001019_030 Hb_001019_030 Hb_005116_040--Hb_001019_030 Hb_025557_070 Hb_025557_070 Hb_005116_040--Hb_025557_070 Hb_005116_040--Hb_007237_060 Hb_000917_030 Hb_000917_030 Hb_005116_040--Hb_000917_030 Hb_005116_040--Hb_000034_060 Hb_120357_010 Hb_120357_010 Hb_049438_020--Hb_120357_010 Hb_000561_040 Hb_000561_040 Hb_049438_020--Hb_000561_040 Hb_000389_100 Hb_000389_100 Hb_049438_020--Hb_000389_100 Hb_049438_020--Hb_001856_260 Hb_162815_010 Hb_162815_010 Hb_049438_020--Hb_162815_010 Hb_031579_010 Hb_031579_010 Hb_000034_060--Hb_031579_010 Hb_146036_010 Hb_146036_010 Hb_000034_060--Hb_146036_010 Hb_002370_020 Hb_002370_020 Hb_000034_060--Hb_002370_020 Hb_000034_060--Hb_000917_030 Hb_000910_030 Hb_000910_030 Hb_000034_060--Hb_000910_030 Hb_001856_260--Hb_000237_060 Hb_001856_260--Hb_000086_530 Hb_001856_260--Hb_000327_100 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_000237_060--Hb_000086_530 Hb_002020_010 Hb_002020_010 Hb_000237_060--Hb_002020_010 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.424386 1.93122 70.039 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28033 0 0 18.6819 18.4944

CAGE analysis