Hb_000910_030

Information

Type -
Description -
Location Contig910: 51203-55917
Sequence    

Annotation

kegg
ID rcu:RCOM_0864260
description hypothetical protein
nr
ID XP_002522908.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SA89
description CASP-like protein 2B1 OS=Ricinus communis GN=RCOM_0864260 PE=2 SV=1
trembl
ID A0A067JZK7
description CASP-like protein OS=Jatropha curcas GN=JCGZ_19405 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 2b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62114: 51205-55749 , PASA_asmbl_62115: 53823-53973 , PASA_asmbl_62116: 54071-54470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000910_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003607_090 0.0376402668 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
3 Hb_005332_160 0.0676821584 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
4 Hb_000659_050 0.0729677806 - - PREDICTED: basic blue protein-like [Jatropha curcas]
5 Hb_001410_080 0.0744516808 - - ring finger protein, putative [Ricinus communis]
6 Hb_000344_030 0.0838774406 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
7 Hb_002869_090 0.0910636673 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
8 Hb_006386_010 0.0953653733 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
9 Hb_000163_170 0.0960712542 - - -
10 Hb_141194_020 0.0983378141 - - carbohydrate transporter, putative [Ricinus communis]
11 Hb_004531_160 0.1019936254 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
12 Hb_001268_290 0.1090164906 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
13 Hb_003849_170 0.1156768345 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
14 Hb_003376_140 0.1158031211 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
15 Hb_001534_140 0.1179521606 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
16 Hb_002616_020 0.1179852028 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_002600_120 0.1194911507 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
18 Hb_000419_140 0.1206829277 - - Aquaporin PIP2.1, putative [Ricinus communis]
19 Hb_008731_010 0.122558404 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
20 Hb_002384_030 0.1269421748 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000910_030 Hb_000910_030 Hb_003607_090 Hb_003607_090 Hb_000910_030--Hb_003607_090 Hb_005332_160 Hb_005332_160 Hb_000910_030--Hb_005332_160 Hb_000659_050 Hb_000659_050 Hb_000910_030--Hb_000659_050 Hb_001410_080 Hb_001410_080 Hb_000910_030--Hb_001410_080 Hb_000344_030 Hb_000344_030 Hb_000910_030--Hb_000344_030 Hb_002869_090 Hb_002869_090 Hb_000910_030--Hb_002869_090 Hb_003607_090--Hb_005332_160 Hb_000163_170 Hb_000163_170 Hb_003607_090--Hb_000163_170 Hb_003607_090--Hb_000659_050 Hb_004531_160 Hb_004531_160 Hb_003607_090--Hb_004531_160 Hb_003607_090--Hb_002869_090 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_005332_160--Hb_001410_080 Hb_169077_030 Hb_169077_030 Hb_005332_160--Hb_169077_030 Hb_141194_020 Hb_141194_020 Hb_005332_160--Hb_141194_020 Hb_000659_050--Hb_002869_090 Hb_000659_050--Hb_000344_030 Hb_000327_100 Hb_000327_100 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_002616_020 Hb_002616_020 Hb_000659_050--Hb_002616_020 Hb_001268_290 Hb_001268_290 Hb_001410_080--Hb_001268_290 Hb_001410_080--Hb_141194_020 Hb_006386_010 Hb_006386_010 Hb_001410_080--Hb_006386_010 Hb_001410_080--Hb_169077_030 Hb_008731_010 Hb_008731_010 Hb_000344_030--Hb_008731_010 Hb_002007_330 Hb_002007_330 Hb_000344_030--Hb_002007_330 Hb_000344_030--Hb_002869_090 Hb_007403_100 Hb_007403_100 Hb_000344_030--Hb_007403_100 Hb_002869_090--Hb_002616_020 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0584836 3.13485 9.48894 74.9017 0.0520967 0.060147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119161 0 0 12.0247 21.8247

CAGE analysis