Hb_141194_020

Information

Type -
Description -
Location Contig141194: 29938-40652
Sequence    

Annotation

kegg
ID rcu:RCOM_0869350
description carbohydrate transporter, putative
nr
ID XP_002527379.1
description carbohydrate transporter, putative [Ricinus communis]
swissprot
ID Q94BZ1
description Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1
trembl
ID B9SN10
description Carbohydrate transporter, putative OS=Ricinus communis GN=RCOM_0869350 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein zinc induced facilitator-like 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11145: 18536-30724 , PASA_asmbl_11146: 38864-40226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141194_020 0.0 - - carbohydrate transporter, putative [Ricinus communis]
2 Hb_001410_080 0.0795516727 - - ring finger protein, putative [Ricinus communis]
3 Hb_005332_160 0.0875002269 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
4 Hb_003376_140 0.0901942614 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
5 Hb_169077_030 0.0912603622 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
6 Hb_007370_010 0.0919131637 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
7 Hb_000910_030 0.0983378141 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_300 0.099298063 - - PREDICTED: perakine reductase-like [Jatropha curcas]
9 Hb_003607_090 0.0994896511 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
10 Hb_000152_570 0.1009503451 - - 21 kDa protein precursor, putative [Ricinus communis]
11 Hb_000419_140 0.1046586801 - - Aquaporin PIP2.1, putative [Ricinus communis]
12 Hb_004531_160 0.1053482065 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
13 Hb_009456_010 0.1058806482 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
14 Hb_002566_020 0.1105816784 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
15 Hb_113766_010 0.1114326451 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
16 Hb_006154_010 0.1137978546 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
17 Hb_000193_070 0.1157943477 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
18 Hb_031224_010 0.1173517227 - - -
19 Hb_000076_280 0.1180831884 - - PREDICTED: pectinesterase-like [Populus euphratica]
20 Hb_003633_170 0.1182470696 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_141194_020 Hb_141194_020 Hb_001410_080 Hb_001410_080 Hb_141194_020--Hb_001410_080 Hb_005332_160 Hb_005332_160 Hb_141194_020--Hb_005332_160 Hb_003376_140 Hb_003376_140 Hb_141194_020--Hb_003376_140 Hb_169077_030 Hb_169077_030 Hb_141194_020--Hb_169077_030 Hb_007370_010 Hb_007370_010 Hb_141194_020--Hb_007370_010 Hb_000910_030 Hb_000910_030 Hb_141194_020--Hb_000910_030 Hb_001410_080--Hb_000910_030 Hb_001268_290 Hb_001268_290 Hb_001410_080--Hb_001268_290 Hb_001410_080--Hb_005332_160 Hb_006386_010 Hb_006386_010 Hb_001410_080--Hb_006386_010 Hb_001410_080--Hb_169077_030 Hb_003607_090 Hb_003607_090 Hb_005332_160--Hb_003607_090 Hb_005332_160--Hb_000910_030 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_005332_160--Hb_169077_030 Hb_004531_160 Hb_004531_160 Hb_003376_140--Hb_004531_160 Hb_006788_110 Hb_006788_110 Hb_003376_140--Hb_006788_110 Hb_006154_010 Hb_006154_010 Hb_003376_140--Hb_006154_010 Hb_003376_140--Hb_169077_030 Hb_000193_070 Hb_000193_070 Hb_003376_140--Hb_000193_070 Hb_000103_300 Hb_000103_300 Hb_003376_140--Hb_000103_300 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_000152_570 Hb_000152_570 Hb_169077_030--Hb_000152_570 Hb_169077_030--Hb_006154_010 Hb_169077_030--Hb_000193_070 Hb_003633_170 Hb_003633_170 Hb_007370_010--Hb_003633_170 Hb_003894_180 Hb_003894_180 Hb_007370_010--Hb_003894_180 Hb_007370_010--Hb_000152_570 Hb_031224_010 Hb_031224_010 Hb_007370_010--Hb_031224_010 Hb_007370_010--Hb_000103_300 Hb_000910_030--Hb_003607_090 Hb_000659_050 Hb_000659_050 Hb_000910_030--Hb_000659_050 Hb_000344_030 Hb_000344_030 Hb_000910_030--Hb_000344_030 Hb_002869_090 Hb_002869_090 Hb_000910_030--Hb_002869_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.404302 1.16175 5.68802 0.0399798 0.0558252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.24209 2.26234

CAGE analysis