Hb_006386_010

Information

Type -
Description -
Location Contig6386: 9809-11647
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07220g
description POPTRDRAFT_553848; QUARTET 3 family protein
nr
ID XP_012081250.1
description PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
swissprot
ID O49432
description Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
trembl
ID A0A067K1R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18189 PE=4 SV=1
Gene Ontology
ID GO:0003006
description polygalacturonase qrt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52061: 9900-10160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006386_010 0.0 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
2 Hb_001268_290 0.047446408 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
3 Hb_001019_030 0.0912816912 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
4 Hb_001410_080 0.0930436811 - - ring finger protein, putative [Ricinus communis]
5 Hb_000910_030 0.0953653733 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000344_030 0.0982852118 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
7 Hb_001195_710 0.1025370862 - - glycosyltransferase family GT8 protein [Populus deltoides]
8 Hb_001584_270 0.1094679287 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001534_140 0.1104141653 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
10 Hb_000188_040 0.11166598 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
11 Hb_002014_130 0.1132889887 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002171_050 0.1133170619 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
13 Hb_005332_160 0.1136370015 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
14 Hb_000449_070 0.1149820146 - - unnamed protein product [Vitis vinifera]
15 Hb_000020_140 0.1150326498 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_010142_060 0.1152485987 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_004625_020 0.1178729078 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
18 Hb_003607_090 0.1203383583 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_008731_010 0.1208781822 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
20 Hb_000368_050 0.1219269308 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006386_010 Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_006386_010--Hb_001268_290 Hb_001019_030 Hb_001019_030 Hb_006386_010--Hb_001019_030 Hb_001410_080 Hb_001410_080 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_001195_710 Hb_001195_710 Hb_006386_010--Hb_001195_710 Hb_001268_290--Hb_001410_080 Hb_001268_290--Hb_001019_030 Hb_184074_010 Hb_184074_010 Hb_001268_290--Hb_184074_010 Hb_182869_010 Hb_182869_010 Hb_001268_290--Hb_182869_010 Hb_001268_290--Hb_001195_710 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020 Hb_005116_040 Hb_005116_040 Hb_001019_030--Hb_005116_040 Hb_001410_080--Hb_000910_030 Hb_005332_160 Hb_005332_160 Hb_001410_080--Hb_005332_160 Hb_141194_020 Hb_141194_020 Hb_001410_080--Hb_141194_020 Hb_169077_030 Hb_169077_030 Hb_001410_080--Hb_169077_030 Hb_003607_090 Hb_003607_090 Hb_000910_030--Hb_003607_090 Hb_000910_030--Hb_005332_160 Hb_000659_050 Hb_000659_050 Hb_000910_030--Hb_000659_050 Hb_000910_030--Hb_000344_030 Hb_002869_090 Hb_002869_090 Hb_000910_030--Hb_002869_090 Hb_008731_010 Hb_008731_010 Hb_000344_030--Hb_008731_010 Hb_002007_330 Hb_002007_330 Hb_000344_030--Hb_002007_330 Hb_000344_030--Hb_000659_050 Hb_000344_030--Hb_002869_090 Hb_007403_100 Hb_007403_100 Hb_000344_030--Hb_007403_100 Hb_001096_010 Hb_001096_010 Hb_001195_710--Hb_001096_010 Hb_000368_050 Hb_000368_050 Hb_001195_710--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.187573 0.310635 3.76954 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.337219 1.31403

CAGE analysis