Hb_182869_010

Information

Type -
Description -
Location Contig182869: 4-744
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q42371
description LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182869_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_000368_050 0.0586609341 - - beta-galactosidase, putative [Ricinus communis]
3 Hb_001511_220 0.0755484553 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
4 Hb_002925_060 0.0836901749 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
5 Hb_000620_050 0.0874799972 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
6 Hb_005711_030 0.0891413615 - - hypothetical protein RCOM_0460020 [Ricinus communis]
7 Hb_003058_240 0.0922135128 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
8 Hb_000813_070 0.0929656242 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001195_710 0.0933353929 - - glycosyltransferase family GT8 protein [Populus deltoides]
10 Hb_002835_070 0.0938587478 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009476_080 0.0941689878 - - BnaA03g18920D [Brassica napus]
12 Hb_001289_070 0.0956380926 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_047612_010 0.0965401787 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
14 Hb_001268_290 0.0979767806 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
15 Hb_002973_050 0.0999999773 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_002171_050 0.1005624715 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
17 Hb_133974_010 0.1058914148 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
18 Hb_000334_030 0.1064145315 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004650_120 0.1077965389 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
20 Hb_001408_200 0.1082216084 - - hypothetical protein JCGZ_08964 [Jatropha curcas]

Gene co-expression network

sample Hb_182869_010 Hb_182869_010 Hb_000368_050 Hb_000368_050 Hb_182869_010--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_002925_060 Hb_002925_060 Hb_182869_010--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_182869_010--Hb_000620_050 Hb_005711_030 Hb_005711_030 Hb_182869_010--Hb_005711_030 Hb_003058_240 Hb_003058_240 Hb_182869_010--Hb_003058_240 Hb_000676_230 Hb_000676_230 Hb_000368_050--Hb_000676_230 Hb_001534_140 Hb_001534_140 Hb_000368_050--Hb_001534_140 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_010142_060 Hb_010142_060 Hb_000368_050--Hb_010142_060 Hb_011224_070 Hb_011224_070 Hb_001511_220--Hb_011224_070 Hb_003747_160 Hb_003747_160 Hb_001511_220--Hb_003747_160 Hb_009476_080 Hb_009476_080 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_002499_030 Hb_002499_030 Hb_001511_220--Hb_002499_030 Hb_001408_200 Hb_001408_200 Hb_002925_060--Hb_001408_200 Hb_002925_060--Hb_000620_050 Hb_002925_060--Hb_003058_240 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_184074_010 Hb_184074_010 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_000620_050--Hb_003058_240 Hb_011519_040 Hb_011519_040 Hb_000620_050--Hb_011519_040 Hb_000813_070 Hb_000813_070 Hb_005711_030--Hb_000813_070 Hb_001289_070 Hb_001289_070 Hb_005711_030--Hb_001289_070 Hb_133974_010 Hb_133974_010 Hb_005711_030--Hb_133974_010 Hb_000103_440 Hb_000103_440 Hb_005711_030--Hb_000103_440 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_003058_240--Hb_000103_440 Hb_003058_240--Hb_000402_060 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_003058_240--Hb_009476_080 Hb_002809_180 Hb_002809_180 Hb_003058_240--Hb_002809_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0272712 0.0504653 0.36782 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0238732 0.23421

CAGE analysis