Hb_011519_040

Information

Type -
Description -
Location Contig11519: 37668-38195
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04770g
description POPTRDRAFT_575025; hypothetical protein
nr
ID XP_002322115.2
description hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PEN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04770g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011519_040 0.0 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
2 Hb_000377_130 0.0642143349 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
3 Hb_186765_010 0.0671345273 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
4 Hb_006755_030 0.0728225101 - - BURP domain-containing protein, putative [Theobroma cacao]
5 Hb_091236_010 0.0865348956 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
6 Hb_000620_050 0.0930286044 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
7 Hb_001408_200 0.0980823705 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
8 Hb_002925_060 0.0982517181 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
9 Hb_000749_280 0.0992447988 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
10 Hb_184074_010 0.1138760854 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
11 Hb_044380_010 0.1142769806 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
12 Hb_000122_230 0.1144465948 - - laccase, putative [Ricinus communis]
13 Hb_121624_010 0.1147581696 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
14 Hb_000402_060 0.114776386 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
15 Hb_002245_060 0.1160211073 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
16 Hb_003371_280 0.1163030835 - - unnamed protein product [Vitis vinifera]
17 Hb_000959_110 0.1198487478 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
18 Hb_002400_300 0.12169056 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
19 Hb_022973_010 0.1223288626 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
20 Hb_001396_130 0.1224994461 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011519_040 Hb_011519_040 Hb_000377_130 Hb_000377_130 Hb_011519_040--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_011519_040--Hb_186765_010 Hb_006755_030 Hb_006755_030 Hb_011519_040--Hb_006755_030 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_000620_050 Hb_000620_050 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_000377_130--Hb_006755_030 Hb_000377_130--Hb_186765_010 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_002925_060 Hb_002925_060 Hb_000377_130--Hb_002925_060 Hb_000377_130--Hb_000620_050 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_186765_010--Hb_006755_030 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_186765_010--Hb_002925_060 Hb_006755_030--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030 Hb_000749_280 Hb_000749_280 Hb_091236_010--Hb_000749_280 Hb_002400_300 Hb_002400_300 Hb_091236_010--Hb_002400_300 Hb_091236_010--Hb_186765_010 Hb_091236_010--Hb_000377_130 Hb_091236_010--Hb_006755_030 Hb_000620_050--Hb_002925_060 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_182869_010 Hb_182869_010 Hb_000620_050--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_000620_050--Hb_003058_240 Hb_000402_060 Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_001408_200--Hb_002925_060 Hb_000122_230 Hb_000122_230 Hb_001408_200--Hb_000122_230 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_001408_200--Hb_003058_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.40149 3.09129 36.0447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.31377 37.4369

CAGE analysis