Hb_002400_300

Information

Type -
Description -
Location Contig2400: 232109-235881
Sequence    

Annotation

kegg
ID rcu:RCOM_0923310
description calcium lipid binding protein, putative
nr
ID XP_012076512.1
description PREDICTED: synaptotagmin-4 [Jatropha curcas]
swissprot
ID A0JJX5
description Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
trembl
ID A0A067KEY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07139 PE=4 SV=1
Gene Ontology
ID GO:0009887
description calcium lipid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25176: 232975-234616 , PASA_asmbl_25177: 234773-235473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_300 0.0 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
2 Hb_091236_010 0.0957388337 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
3 Hb_006920_020 0.1038371686 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_000122_230 0.1071030376 - - laccase, putative [Ricinus communis]
5 Hb_001832_170 0.1153182823 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
6 Hb_000975_170 0.1170231931 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
7 Hb_002245_060 0.1184396537 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
8 Hb_011519_040 0.12169056 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
9 Hb_121624_010 0.1253998046 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
10 Hb_000176_050 0.1272453683 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
11 Hb_000749_280 0.1286834697 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
12 Hb_002374_510 0.1297977241 - - Esterase precursor, putative [Ricinus communis]
13 Hb_000552_010 0.1347395144 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
14 Hb_186765_010 0.1352695406 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
15 Hb_001408_200 0.1353384128 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
16 Hb_002925_060 0.1408113582 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
17 Hb_000377_130 0.1411346823 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
18 Hb_000963_120 0.1412955744 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
19 Hb_000402_060 0.1421743109 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
20 Hb_004957_050 0.1440511056 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]

Gene co-expression network

sample Hb_002400_300 Hb_002400_300 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_001832_170 Hb_001832_170 Hb_002400_300--Hb_001832_170 Hb_000975_170 Hb_000975_170 Hb_002400_300--Hb_000975_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_011519_040 Hb_011519_040 Hb_091236_010--Hb_011519_040 Hb_000749_280 Hb_000749_280 Hb_091236_010--Hb_000749_280 Hb_186765_010 Hb_186765_010 Hb_091236_010--Hb_186765_010 Hb_000377_130 Hb_000377_130 Hb_091236_010--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_091236_010--Hb_006755_030 Hb_001289_070 Hb_001289_070 Hb_006920_020--Hb_001289_070 Hb_000176_050 Hb_000176_050 Hb_006920_020--Hb_000176_050 Hb_006920_020--Hb_000122_230 Hb_002925_060 Hb_002925_060 Hb_006920_020--Hb_002925_060 Hb_001408_200 Hb_001408_200 Hb_006920_020--Hb_001408_200 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_000122_230--Hb_001408_200 Hb_080797_010 Hb_080797_010 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_182424_020 Hb_182424_020 Hb_000975_170--Hb_182424_020 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_001221_240 Hb_001221_240 Hb_000975_170--Hb_001221_240 Hb_031330_020 Hb_031330_020 Hb_000975_170--Hb_031330_020 Hb_000654_020 Hb_000654_020 Hb_002245_060--Hb_000654_020 Hb_002245_060--Hb_007620_020 Hb_000670_070 Hb_000670_070 Hb_002245_060--Hb_000670_070 Hb_002245_060--Hb_001408_200 Hb_005539_150 Hb_005539_150 Hb_002245_060--Hb_005539_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0110919 0.332005 0.972412 6.26211 0.0429888 0.0410282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0756806 0.0992422 0.112594 1.13826 7.61055

CAGE analysis