Hb_000552_010

Information

Type -
Description -
Location Contig552: 14555-16034
Sequence    

Annotation

kegg
ID tcc:TCM_002413
description FASCICLIN-like arabinogalactan 2
nr
ID XP_012081483.1
description PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
swissprot
ID Q9SU13
description Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1
trembl
ID A0A067K4F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18502 PE=4 SV=1
Gene Ontology
ID GO:0005774
description fasciclin-like arabinogalactan protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48292: 14501-15949
cDNA
(Sanger)
(ID:Location)		 002_M18.ab1: 14501-15335 , 007_A24.ab1: 14510-15429 , 032_I19.ab1: 14507-14792 , 034_D16.ab1: 14501-15381 , 051_C06.ab1: 14518-15199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000552_010 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
2 Hb_001832_170 0.1191989399 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
3 Hb_002400_300 0.1347395144 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
4 Hb_010620_030 0.1427453845 - - beta-amyrin synthase [Euphorbia tirucalli]
5 Hb_000920_100 0.1476501393 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_000176_050 0.148337663 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
7 Hb_001221_240 0.1502537641 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006920_020 0.1599267712 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_000122_230 0.1613094432 - - laccase, putative [Ricinus communis]
10 Hb_002119_110 0.1635693674 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
11 Hb_000005_370 0.1651736641 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
12 Hb_000975_170 0.167977176 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
13 Hb_000417_220 0.1681367529 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
14 Hb_000963_120 0.16818607 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
15 Hb_000152_530 0.169771313 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
16 Hb_000270_340 0.1727100016 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
17 Hb_000005_010 0.1736525417 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
18 Hb_000251_120 0.1745223316 - - O-acetyltransferase, putative [Ricinus communis]
19 Hb_001001_070 0.1762042405 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
20 Hb_091236_010 0.1767380348 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]

Gene co-expression network

sample Hb_000552_010 Hb_000552_010 Hb_001832_170 Hb_001832_170 Hb_000552_010--Hb_001832_170 Hb_002400_300 Hb_002400_300 Hb_000552_010--Hb_002400_300 Hb_010620_030 Hb_010620_030 Hb_000552_010--Hb_010620_030 Hb_000920_100 Hb_000920_100 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_001221_240 Hb_001221_240 Hb_000552_010--Hb_001221_240 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_001832_170--Hb_002400_300 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_000975_170 Hb_000975_170 Hb_002400_300--Hb_000975_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_006483_120 Hb_006483_120 Hb_010620_030--Hb_006483_120 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_000056_110 Hb_000056_110 Hb_010620_030--Hb_000056_110 Hb_000439_020 Hb_000439_020 Hb_010620_030--Hb_000439_020 Hb_004837_080 Hb_004837_080 Hb_000920_100--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_000920_100--Hb_000254_080 Hb_000230_490 Hb_000230_490 Hb_000920_100--Hb_000230_490 Hb_004934_130 Hb_004934_130 Hb_000920_100--Hb_004934_130 Hb_089124_010 Hb_089124_010 Hb_000920_100--Hb_089124_010 Hb_001097_140 Hb_001097_140 Hb_000920_100--Hb_001097_140 Hb_000176_050--Hb_000122_230 Hb_080797_010 Hb_080797_010 Hb_000176_050--Hb_080797_010 Hb_000005_010 Hb_000005_010 Hb_000176_050--Hb_000005_010 Hb_000176_050--Hb_006920_020 Hb_001408_200 Hb_001408_200 Hb_000176_050--Hb_001408_200 Hb_000176_050--Hb_001097_140 Hb_042463_010 Hb_042463_010 Hb_001221_240--Hb_042463_010 Hb_159308_020 Hb_159308_020 Hb_001221_240--Hb_159308_020 Hb_001221_240--Hb_000975_170 Hb_001221_240--Hb_002400_300 Hb_001221_240--Hb_001832_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0784 17.8489 33.7901 191.047 6.49067 2.36078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44845 4.58472 1.26982 34.7815 270.262

CAGE analysis