Hb_006920_020

Information

Type -
Description -
Location Contig6920: 20746-24426
Sequence    

Annotation

kegg
ID rcu:RCOM_1299900
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002519394.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID Q38890
description Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1
trembl
ID B9S075
description Endoglucanase OS=Ricinus communis GN=RCOM_1299900 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endo- -beta-glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54464: 20717-24427 , PASA_asmbl_54465: 20717-21683
cDNA
(Sanger)
(ID:Location)		 008_B07.ab1: 20717-21390 , 031_N15.ab1: 20717-21584 , 040_B02.ab1: 20790-21640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006920_020 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_001289_070 0.0980740519 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_000176_050 0.0982294667 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
4 Hb_002400_300 0.1038371686 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
5 Hb_000122_230 0.1081072402 - - laccase, putative [Ricinus communis]
6 Hb_002925_060 0.1105687851 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
7 Hb_001408_200 0.1112801219 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
8 Hb_002119_110 0.1138612588 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
9 Hb_000963_120 0.1181877665 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
10 Hb_001235_120 0.1205283407 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
11 Hb_004032_190 0.1215983551 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
12 Hb_005000_150 0.1239920365 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000005_010 0.1249210161 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
14 Hb_186765_010 0.1262826395 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
15 Hb_003152_020 0.1273399364 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
16 Hb_080797_010 0.1286350426 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
17 Hb_001688_050 0.1289647558 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
18 Hb_121624_010 0.1313735571 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
19 Hb_000103_130 0.1326985587 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
20 Hb_004374_030 0.1329447639 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_006920_020 Hb_006920_020 Hb_001289_070 Hb_001289_070 Hb_006920_020--Hb_001289_070 Hb_000176_050 Hb_000176_050 Hb_006920_020--Hb_000176_050 Hb_002400_300 Hb_002400_300 Hb_006920_020--Hb_002400_300 Hb_000122_230 Hb_000122_230 Hb_006920_020--Hb_000122_230 Hb_002925_060 Hb_002925_060 Hb_006920_020--Hb_002925_060 Hb_001408_200 Hb_001408_200 Hb_006920_020--Hb_001408_200 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_002151_070 Hb_002151_070 Hb_001289_070--Hb_002151_070 Hb_000176_050--Hb_000122_230 Hb_080797_010 Hb_080797_010 Hb_000176_050--Hb_080797_010 Hb_000005_010 Hb_000005_010 Hb_000176_050--Hb_000005_010 Hb_000176_050--Hb_001408_200 Hb_001097_140 Hb_001097_140 Hb_000176_050--Hb_001097_140 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_002400_300--Hb_000122_230 Hb_001832_170 Hb_001832_170 Hb_002400_300--Hb_001832_170 Hb_000975_170 Hb_000975_170 Hb_002400_300--Hb_000975_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_000122_230--Hb_001408_200 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020 Hb_002925_060--Hb_001408_200 Hb_000620_050 Hb_000620_050 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_001408_200--Hb_003058_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.600767 18.3215 32.2643 175.965 2.31776 0.261566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123948 0.334399 4.51536 18.9562 184.564

CAGE analysis