Hb_000176_050

Information

Type -
Description -
Location Contig176: 72694-73961
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11090g
description POPTRDRAFT_578695; glutamine amidotransferase class-I domain-containing family protein
nr
ID XP_002324516.1
description glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
swissprot
ID Q12288
description Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1
trembl
ID B9IM91
description Glutamine amidotransferase class-I domain-containing family protein OS=Populus trichocarpa GN=POPTR_0018s11090g PE=4 SV=1
Gene Ontology
ID GO:0003677
description glutamine amidotransferase ylr126c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16857: 72644-73313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_050 0.0 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
2 Hb_000122_230 0.085829219 - - laccase, putative [Ricinus communis]
3 Hb_080797_010 0.09119494 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
4 Hb_000005_010 0.096021976 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
5 Hb_006920_020 0.0982294667 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_001408_200 0.1044337942 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
7 Hb_001097_140 0.1061971251 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002925_060 0.1079791457 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
9 Hb_005000_150 0.1101580743 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004837_080 0.1111596202 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
11 Hb_000230_490 0.1115475142 - - conserved hypothetical protein [Ricinus communis]
12 Hb_186765_010 0.1121757256 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
13 Hb_008001_030 0.1157163273 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
14 Hb_000920_100 0.120067942 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_001712_030 0.1206721356 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
16 Hb_000377_130 0.1217309872 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
17 Hb_001269_540 0.1219078723 - - hypothetical protein VITISV_038016 [Vitis vinifera]
18 Hb_001514_050 0.1223670717 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
19 Hb_001289_070 0.1233321116 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_000963_120 0.1235825234 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000176_050 Hb_000176_050 Hb_000122_230 Hb_000122_230 Hb_000176_050--Hb_000122_230 Hb_080797_010 Hb_080797_010 Hb_000176_050--Hb_080797_010 Hb_000005_010 Hb_000005_010 Hb_000176_050--Hb_000005_010 Hb_006920_020 Hb_006920_020 Hb_000176_050--Hb_006920_020 Hb_001408_200 Hb_001408_200 Hb_000176_050--Hb_001408_200 Hb_001097_140 Hb_001097_140 Hb_000176_050--Hb_001097_140 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_000122_230--Hb_001408_200 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020 Hb_001269_540 Hb_001269_540 Hb_080797_010--Hb_001269_540 Hb_080797_010--Hb_004837_080 Hb_080797_010--Hb_001097_140 Hb_000230_490 Hb_000230_490 Hb_080797_010--Hb_000230_490 Hb_002119_150 Hb_002119_150 Hb_080797_010--Hb_002119_150 Hb_004032_190 Hb_004032_190 Hb_000005_010--Hb_004032_190 Hb_001289_070 Hb_001289_070 Hb_000005_010--Hb_001289_070 Hb_163950_050 Hb_163950_050 Hb_000005_010--Hb_163950_050 Hb_002119_110 Hb_002119_110 Hb_000005_010--Hb_002119_110 Hb_002925_060 Hb_002925_060 Hb_000005_010--Hb_002925_060 Hb_006920_020--Hb_001289_070 Hb_002400_300 Hb_002400_300 Hb_006920_020--Hb_002400_300 Hb_006920_020--Hb_000122_230 Hb_006920_020--Hb_002925_060 Hb_006920_020--Hb_001408_200 Hb_000402_060 Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_001408_200--Hb_002925_060 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_003058_240 Hb_003058_240 Hb_001408_200--Hb_003058_240 Hb_000207_240 Hb_000207_240 Hb_001097_140--Hb_000207_240 Hb_003714_030 Hb_003714_030 Hb_001097_140--Hb_003714_030 Hb_001097_140--Hb_001269_540 Hb_186765_010 Hb_186765_010 Hb_001097_140--Hb_186765_010 Hb_001097_140--Hb_004837_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238231 0.342813 0.435997 2.74673 0.0223335 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0429573 0 0.242219 3.32452

CAGE analysis