Hb_001097_140

Information

Type -
Description -
Location Contig1097: 137650-148141
Sequence    

Annotation

kegg
ID rcu:RCOM_0905810
description hypothetical protein
nr
ID XP_002518540.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_080797_010 0.0710364655 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
3 Hb_000207_240 0.0734690776 - - hypothetical protein RCOM_0686540 [Ricinus communis]
4 Hb_003714_030 0.0966469321 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_001269_540 0.0986824471 - - hypothetical protein VITISV_038016 [Vitis vinifera]
6 Hb_186765_010 0.0988640199 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
7 Hb_004837_080 0.1041926198 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
8 Hb_089124_010 0.1046646708 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
9 Hb_000176_050 0.1061971251 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
10 Hb_000000_290 0.1067942517 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
11 Hb_000920_100 0.1092979259 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_000963_120 0.1094776055 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
13 Hb_000230_490 0.1094858985 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001396_130 0.1103003862 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007620_020 0.1112259518 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_000122_230 0.1177497487 - - laccase, putative [Ricinus communis]
17 Hb_004374_030 0.1211148472 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_016277_030 0.12446403 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
19 Hb_000254_080 0.1245428813 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
20 Hb_000856_210 0.1254339074 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001097_140 Hb_001097_140 Hb_080797_010 Hb_080797_010 Hb_001097_140--Hb_080797_010 Hb_000207_240 Hb_000207_240 Hb_001097_140--Hb_000207_240 Hb_003714_030 Hb_003714_030 Hb_001097_140--Hb_003714_030 Hb_001269_540 Hb_001269_540 Hb_001097_140--Hb_001269_540 Hb_186765_010 Hb_186765_010 Hb_001097_140--Hb_186765_010 Hb_004837_080 Hb_004837_080 Hb_001097_140--Hb_004837_080 Hb_080797_010--Hb_001269_540 Hb_080797_010--Hb_004837_080 Hb_000122_230 Hb_000122_230 Hb_080797_010--Hb_000122_230 Hb_000230_490 Hb_000230_490 Hb_080797_010--Hb_000230_490 Hb_002119_150 Hb_002119_150 Hb_080797_010--Hb_002119_150 Hb_000856_210 Hb_000856_210 Hb_000207_240--Hb_000856_210 Hb_000207_240--Hb_003714_030 Hb_006351_120 Hb_006351_120 Hb_000207_240--Hb_006351_120 Hb_019925_020 Hb_019925_020 Hb_000207_240--Hb_019925_020 Hb_001396_130 Hb_001396_130 Hb_000207_240--Hb_001396_130 Hb_044380_010 Hb_044380_010 Hb_003714_030--Hb_044380_010 Hb_001248_140 Hb_001248_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_004530_010 Hb_004530_010 Hb_003714_030--Hb_004530_010 Hb_001269_540--Hb_000230_490 Hb_001269_540--Hb_004837_080 Hb_001269_540--Hb_002119_150 Hb_000254_080 Hb_000254_080 Hb_001269_540--Hb_000254_080 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_186765_010--Hb_001396_130 Hb_000377_130 Hb_000377_130 Hb_186765_010--Hb_000377_130 Hb_011519_040 Hb_011519_040 Hb_186765_010--Hb_011519_040 Hb_006755_030 Hb_006755_030 Hb_186765_010--Hb_006755_030 Hb_002925_060 Hb_002925_060 Hb_186765_010--Hb_002925_060 Hb_004837_080--Hb_000254_080 Hb_004837_080--Hb_002119_150 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.810057 0.534473 3.55414 0.0123171 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.605675 5.22486

CAGE analysis