Hb_000122_230

Information

Type -
Description -
Location Contig122: 182963-195264
Sequence    

Annotation

kegg
ID rcu:RCOM_0687660
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002520797.1
description laccase, putative [Ricinus communis]
swissprot
ID Q9SIY8
description Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1
trembl
ID B9S478
description Laccase OS=Ricinus communis GN=RCOM_0687660 PE=3 SV=1
Gene Ontology
ID GO:0005507
description laccase-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06671: 183995-187397 , PASA_asmbl_06672: 193041-193316 , PASA_asmbl_06673: 193398-195178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_230 0.0 - - laccase, putative [Ricinus communis]
2 Hb_002245_060 0.0706094009 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
3 Hb_004837_080 0.0728384166 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
4 Hb_001408_200 0.0759044935 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
5 Hb_080797_010 0.0791861144 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
6 Hb_000254_080 0.0831566619 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
7 Hb_007620_020 0.0841632256 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000176_050 0.085829219 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
9 Hb_002119_150 0.0867906908 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
10 Hb_000402_060 0.0975698718 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
11 Hb_010883_160 0.1027121587 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_000654_020 0.1066379353 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
13 Hb_002400_300 0.1071030376 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
14 Hb_006920_020 0.1081072402 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_001657_020 0.1081421929 - - heat shock family protein [Populus trichocarpa]
16 Hb_000670_070 0.1084143031 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
17 Hb_008518_060 0.1103053522 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
18 Hb_001269_540 0.1113003171 - - hypothetical protein VITISV_038016 [Vitis vinifera]
19 Hb_089124_010 0.1114157645 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
20 Hb_003152_020 0.1126339349 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]

Gene co-expression network

sample Hb_000122_230 Hb_000122_230 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_004837_080 Hb_004837_080 Hb_000122_230--Hb_004837_080 Hb_001408_200 Hb_001408_200 Hb_000122_230--Hb_001408_200 Hb_080797_010 Hb_080797_010 Hb_000122_230--Hb_080797_010 Hb_000254_080 Hb_000254_080 Hb_000122_230--Hb_000254_080 Hb_007620_020 Hb_007620_020 Hb_000122_230--Hb_007620_020 Hb_000654_020 Hb_000654_020 Hb_002245_060--Hb_000654_020 Hb_002245_060--Hb_007620_020 Hb_000670_070 Hb_000670_070 Hb_002245_060--Hb_000670_070 Hb_002245_060--Hb_001408_200 Hb_005539_150 Hb_005539_150 Hb_002245_060--Hb_005539_150 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_004837_080--Hb_007620_020 Hb_000402_060 Hb_000402_060 Hb_001408_200--Hb_000402_060 Hb_002925_060 Hb_002925_060 Hb_001408_200--Hb_002925_060 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_001408_200--Hb_001397_020 Hb_003058_240 Hb_003058_240 Hb_001408_200--Hb_003058_240 Hb_080797_010--Hb_001269_540 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_000230_490 Hb_000230_490 Hb_080797_010--Hb_000230_490 Hb_080797_010--Hb_002119_150 Hb_000254_080--Hb_002119_150 Hb_000254_080--Hb_001269_540 Hb_000254_080--Hb_080797_010 Hb_000997_370 Hb_000997_370 Hb_000254_080--Hb_000997_370 Hb_089124_010 Hb_089124_010 Hb_007620_020--Hb_089124_010 Hb_000608_190 Hb_000608_190 Hb_007620_020--Hb_000608_190 Hb_007620_020--Hb_000670_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231221 9.08268 24.9891 124.703 0.243484 0.134255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.224522 0.36694 0.103678 13.3334 180.143

CAGE analysis