Hb_000608_190

Information

Type rubber biosynthesis
Description Gene Name: Isopentenyl-diphosphate delta isomerase
Location Contig608: 83767-87313
Sequence    

Annotation

kegg
ID rcu:RCOM_1078490
description isopentenyl-diphosphate delta isomerase, putative (EC:5.3.3.2)
nr
ID XP_012085763.1
description PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
swissprot
ID O48965
description Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1
trembl
ID A0A067K3N5
description Isopentenyl diphosphate isomerase OS=Jatropha curcas GN=JCGZ_18028 PE=2 SV=1
Gene Ontology
ID GO:0016853
description isopentenyl-diphosphate delta-isomerase i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50829: 83763-87257 , PASA_asmbl_50831: 86754-86907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_190 0.0 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
2 Hb_007620_020 0.0557580186 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_000670_070 0.0581516484 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
4 Hb_000424_140 0.0685587873 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
5 Hb_003358_030 0.0712221626 - - ankyrin-kinase, putative [Ricinus communis]
6 Hb_089124_010 0.072353154 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
7 Hb_000958_090 0.0906341544 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
8 Hb_004052_030 0.0923961463 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
9 Hb_004837_080 0.0934850251 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
10 Hb_005569_010 0.0967056926 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_003195_080 0.0975737196 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
12 Hb_001541_200 0.098124721 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
13 Hb_026549_060 0.0988131261 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001657_020 0.0994663918 - - heat shock family protein [Populus trichocarpa]
15 Hb_001699_110 0.1042844831 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_001488_160 0.1043594808 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_000477_090 0.1055027832 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
18 Hb_020956_030 0.1058805291 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
19 Hb_005842_010 0.1080264365 - - nitrate transporter, putative [Ricinus communis]
20 Hb_000665_210 0.1085768883 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_190 Hb_000608_190 Hb_007620_020 Hb_007620_020 Hb_000608_190--Hb_007620_020 Hb_000670_070 Hb_000670_070 Hb_000608_190--Hb_000670_070 Hb_000424_140 Hb_000424_140 Hb_000608_190--Hb_000424_140 Hb_003358_030 Hb_003358_030 Hb_000608_190--Hb_003358_030 Hb_089124_010 Hb_089124_010 Hb_000608_190--Hb_089124_010 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_007620_020--Hb_089124_010 Hb_007620_020--Hb_000670_070 Hb_004837_080 Hb_004837_080 Hb_007620_020--Hb_004837_080 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_000122_230 Hb_000122_230 Hb_007620_020--Hb_000122_230 Hb_000670_070--Hb_000424_140 Hb_005842_010 Hb_005842_010 Hb_000670_070--Hb_005842_010 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_000670_070--Hb_002245_060 Hb_005569_010 Hb_005569_010 Hb_000424_140--Hb_005569_010 Hb_000424_140--Hb_005842_010 Hb_000424_140--Hb_000958_090 Hb_009421_070 Hb_009421_070 Hb_000424_140--Hb_009421_070 Hb_029386_010 Hb_029386_010 Hb_003358_030--Hb_029386_010 Hb_004052_030 Hb_004052_030 Hb_003358_030--Hb_004052_030 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_000477_090 Hb_000477_090 Hb_003358_030--Hb_000477_090 Hb_003358_030--Hb_007620_020 Hb_089124_010--Hb_004837_080 Hb_089124_010--Hb_000670_070 Hb_080797_010 Hb_080797_010 Hb_089124_010--Hb_080797_010 Hb_089124_010--Hb_003358_030 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_004835_020 Hb_004835_020 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_000958_090--Hb_005569_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0303748 10.4051 36.5626 73.6312 0.0588918 0.106151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138525 0.0272439 0 10.5077 142.325

CAGE analysis