Hb_029386_010

Information

Type -
Description -
Location Contig29386: 25855-26232
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13220g
description RALF-LIKE 27 family protein
nr
ID XP_006373378.1
description RALF-LIKE 27 family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PEG6
description RALF-LIKE 27 family protein OS=Populus trichocarpa GN=POPTR_0017s13220g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30748: 25780-26538
cDNA
(Sanger)
(ID:Location)		 007_B14.ab1: 25872-26511 , 008_O05.ab1: 25872-26363 , 011_N05.ab1: 25872-26512 , 035_G15.ab1: 25859-26428 , 035_H21.ab1: 25871-26531 , 039_L18.ab1: 25872-26363 , 043_J12.ab1: 25875-26513 , 043_J21.ab1: 25872-26516 , 044_G20.ab1: 25872-26360 , 047_E08.ab1: 25872-26433 , 052_D07.ab1: 25872-26516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029386_010 0.0 - - RALF-LIKE 27 family protein [Populus trichocarpa]
2 Hb_003358_030 0.0727565338 - - ankyrin-kinase, putative [Ricinus communis]
3 Hb_005539_150 0.0887839222 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
4 Hb_000477_090 0.0899796132 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
5 Hb_000627_110 0.0915882076 - - cellulose synthase, putative [Ricinus communis]
6 Hb_000223_090 0.0935185683 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_004896_030 0.0988467988 - - hypothetical protein VITISV_007475 [Vitis vinifera]
8 Hb_002740_060 0.1014742706 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
9 Hb_000997_370 0.1108542709 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
10 Hb_005348_050 0.11146188 - - beta-galactosidase, putative [Ricinus communis]
11 Hb_008253_050 0.1150861426 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
12 Hb_004052_030 0.1169893563 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
13 Hb_033681_030 0.1187539476 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
14 Hb_000265_030 0.1188370902 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
15 Hb_000608_190 0.1197695148 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
16 Hb_000199_090 0.1199991944 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
17 Hb_001894_100 0.1208440093 - - PREDICTED: kininogen-1-like [Jatropha curcas]
18 Hb_128750_010 0.1224300046 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_133076_010 0.1260726526 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
20 Hb_001488_160 0.126977809 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029386_010 Hb_029386_010 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030 Hb_000608_190 Hb_000608_190 Hb_003358_030--Hb_000608_190 Hb_004052_030 Hb_004052_030 Hb_003358_030--Hb_004052_030 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_003358_030--Hb_000477_090 Hb_007620_020 Hb_007620_020 Hb_003358_030--Hb_007620_020 Hb_005539_150--Hb_000477_090 Hb_000654_020 Hb_000654_020 Hb_005539_150--Hb_000654_020 Hb_002245_060 Hb_002245_060 Hb_005539_150--Hb_002245_060 Hb_008253_050 Hb_008253_050 Hb_005539_150--Hb_008253_050 Hb_000670_070 Hb_000670_070 Hb_005539_150--Hb_000670_070 Hb_008195_090 Hb_008195_090 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_033681_030 Hb_033681_030 Hb_000477_090--Hb_033681_030 Hb_000199_090 Hb_000199_090 Hb_000627_110--Hb_000199_090 Hb_000627_110--Hb_004896_030 Hb_014510_030 Hb_014510_030 Hb_000627_110--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_000627_110--Hb_000415_080 Hb_040245_010 Hb_040245_010 Hb_000627_110--Hb_040245_010 Hb_005348_050 Hb_005348_050 Hb_000223_090--Hb_005348_050 Hb_000223_090--Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_000223_090--Hb_001790_060 Hb_000223_090--Hb_008253_050 Hb_133076_010 Hb_133076_010 Hb_000223_090--Hb_133076_010 Hb_002740_060 Hb_002740_060 Hb_004896_030--Hb_002740_060 Hb_004896_030--Hb_000199_090 Hb_004896_030--Hb_014510_030 Hb_114893_010 Hb_114893_010 Hb_004896_030--Hb_114893_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7577 28.7844 423.17 863.702 6.11595 12.5684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22712 1.92453 1.37427 182.677 2292.6

CAGE analysis