Hb_005348_050

Information

Type -
Description -
Location Contig5348: 29383-51436
Sequence    

Annotation

kegg
ID rcu:RCOM_0711410
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002516256.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID P49676
description Beta-galactosidase OS=Brassica oleracea PE=2 SV=1
trembl
ID B9RR87
description Beta-galactosidase OS=Ricinus communis GN=RCOM_0711410 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_050 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_000223_090 0.0396824143 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_001894_100 0.0630783956 - - PREDICTED: kininogen-1-like [Jatropha curcas]
4 Hb_011618_010 0.0815620845 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_001790_060 0.0837946615 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
6 Hb_002659_050 0.0854563376 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
7 Hb_008253_050 0.0861099463 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
8 Hb_000589_410 0.0919448547 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
9 Hb_004459_050 0.1081239783 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006133_010 0.1093118913 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
11 Hb_133076_010 0.1112417071 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
12 Hb_029386_010 0.11146188 - - RALF-LIKE 27 family protein [Populus trichocarpa]
13 Hb_000477_090 0.1190132573 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
14 Hb_000696_060 0.1191619061 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001384_040 0.11930607 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
16 Hb_002740_060 0.1197719786 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
17 Hb_006573_240 0.12014959 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
18 Hb_004896_030 0.1217640985 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_041139_010 0.1218969356 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
20 Hb_008948_130 0.1237900519 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005348_050 Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_005348_050--Hb_000223_090 Hb_001894_100 Hb_001894_100 Hb_005348_050--Hb_001894_100 Hb_011618_010 Hb_011618_010 Hb_005348_050--Hb_011618_010 Hb_001790_060 Hb_001790_060 Hb_005348_050--Hb_001790_060 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_008253_050 Hb_008253_050 Hb_005348_050--Hb_008253_050 Hb_000223_090--Hb_001894_100 Hb_000223_090--Hb_001790_060 Hb_000223_090--Hb_008253_050 Hb_029386_010 Hb_029386_010 Hb_000223_090--Hb_029386_010 Hb_133076_010 Hb_133076_010 Hb_000223_090--Hb_133076_010 Hb_001894_100--Hb_001790_060 Hb_001894_100--Hb_008253_050 Hb_001894_100--Hb_133076_010 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_041139_010 Hb_041139_010 Hb_011618_010--Hb_041139_010 Hb_011618_010--Hb_008253_050 Hb_001384_040 Hb_001384_040 Hb_011618_010--Hb_001384_040 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410 Hb_001790_060--Hb_133076_010 Hb_000268_050 Hb_000268_050 Hb_001790_060--Hb_000268_050 Hb_003528_100 Hb_003528_100 Hb_001790_060--Hb_003528_100 Hb_002659_050--Hb_000589_410 Hb_006133_010 Hb_006133_010 Hb_002659_050--Hb_006133_010 Hb_004459_050 Hb_004459_050 Hb_002659_050--Hb_004459_050 Hb_043935_010 Hb_043935_010 Hb_002659_050--Hb_043935_010 Hb_008948_130 Hb_008948_130 Hb_002659_050--Hb_008948_130 Hb_008253_050--Hb_041139_010 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0129646 0.0149797 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00305498 0.0496669

CAGE analysis