Hb_011618_010

Information

Type -
Description -
Location Contig11618: 18604-20634
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24080g
description POPTRDRAFT_838390; kinase family protein
nr
ID XP_012064945.1
description PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LIT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05631 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_010 0.0 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
2 Hb_041139_010 0.0648819422 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_008253_050 0.069223414 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
4 Hb_001384_040 0.0741980564 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
5 Hb_005348_050 0.0815620845 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_001894_100 0.0881310495 - - PREDICTED: kininogen-1-like [Jatropha curcas]
7 Hb_000589_410 0.0882272534 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
8 Hb_000139_360 0.0918231766 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
9 Hb_113379_010 0.0990381985 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
10 Hb_002659_050 0.1091871431 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
11 Hb_000696_060 0.1098823906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000223_090 0.1104433543 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_001491_070 0.1171934847 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
14 Hb_002001_030 0.1233366244 - - Plasma membrane ATPase 4 [Gossypium arboreum]
15 Hb_002740_060 0.1249745032 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
16 Hb_044478_010 0.1273255078 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
17 Hb_156093_010 0.1280429383 - - hypothetical protein RCOM_0504250 [Ricinus communis]
18 Hb_172426_070 0.129060575 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_012539_080 0.1306245825 - - Polyprotein, putative [Solanum demissum]
20 Hb_000477_090 0.1310982626 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]

Gene co-expression network

sample Hb_011618_010 Hb_011618_010 Hb_041139_010 Hb_041139_010 Hb_011618_010--Hb_041139_010 Hb_008253_050 Hb_008253_050 Hb_011618_010--Hb_008253_050 Hb_001384_040 Hb_001384_040 Hb_011618_010--Hb_001384_040 Hb_005348_050 Hb_005348_050 Hb_011618_010--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410 Hb_041139_010--Hb_008253_050 Hb_008441_010 Hb_008441_010 Hb_041139_010--Hb_008441_010 Hb_002001_030 Hb_002001_030 Hb_041139_010--Hb_002001_030 Hb_041139_010--Hb_001894_100 Hb_172426_070 Hb_172426_070 Hb_041139_010--Hb_172426_070 Hb_008253_050--Hb_001894_100 Hb_008253_050--Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_008253_050--Hb_000223_090 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_113379_010 Hb_113379_010 Hb_001384_040--Hb_113379_010 Hb_002740_060 Hb_002740_060 Hb_001384_040--Hb_002740_060 Hb_001384_040--Hb_008253_050 Hb_001384_040--Hb_041139_010 Hb_001384_040--Hb_002001_030 Hb_005348_050--Hb_000223_090 Hb_005348_050--Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_005348_050--Hb_001790_060 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_001894_100--Hb_001790_060 Hb_001894_100--Hb_000223_090 Hb_133076_010 Hb_133076_010 Hb_001894_100--Hb_133076_010 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_000589_410--Hb_002659_050 Hb_000185_010 Hb_000185_010 Hb_000589_410--Hb_000185_010 Hb_006132_080 Hb_006132_080 Hb_000589_410--Hb_006132_080 Hb_003186_030 Hb_003186_030 Hb_000589_410--Hb_003186_030 Hb_000589_410--Hb_005348_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0321202 0.0304921 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00730574 0.0775246

CAGE analysis