Hb_003151_020

Information

Type -
Description -
Location Contig3151: 10222-28077
Sequence    

Annotation

kegg
ID tcc:TCM_001416
description Ankyrin repeat family protein, putative
nr
ID XP_007048310.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A061DJE0
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_001416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33237: 23147-24859 , PASA_asmbl_33238: 25412-26851 , PASA_asmbl_33239: 27953-28712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003151_020 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_001232_070 0.0590801953 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002391_340 0.0605152423 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
4 Hb_001472_150 0.0613001182 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
5 Hb_008195_090 0.0663079569 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006483_040 0.0692480429 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
7 Hb_000329_120 0.0693200715 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_000193_360 0.0710158742 - - PREDICTED: uncharacterized protein At5g01610-like [Jatropha curcas]
9 Hb_065774_010 0.0742348966 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
10 Hb_000046_400 0.078569925 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005839_040 0.0786063148 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
12 Hb_001437_170 0.0789157264 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
13 Hb_000268_050 0.0790690696 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
14 Hb_154038_010 0.0796517512 - - cytochrome P450, putative [Ricinus communis]
15 Hb_029991_010 0.0798675593 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
16 Hb_004563_010 0.082468307 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_002073_130 0.0828069477 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
18 Hb_096907_010 0.0829482916 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_000160_120 0.0844293409 - - conserved hypothetical protein [Ricinus communis]
20 Hb_064445_020 0.086523783 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]

Gene co-expression network

sample Hb_003151_020 Hb_003151_020 Hb_001232_070 Hb_001232_070 Hb_003151_020--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_008195_090 Hb_008195_090 Hb_003151_020--Hb_008195_090 Hb_006483_040 Hb_006483_040 Hb_003151_020--Hb_006483_040 Hb_000329_120 Hb_000329_120 Hb_003151_020--Hb_000329_120 Hb_001232_070--Hb_002391_340 Hb_001232_070--Hb_000329_120 Hb_001232_070--Hb_006483_040 Hb_001232_070--Hb_001472_150 Hb_065774_010 Hb_065774_010 Hb_001232_070--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_001232_070--Hb_001437_170 Hb_002391_340--Hb_065774_010 Hb_002391_340--Hb_001437_170 Hb_002391_340--Hb_006483_040 Hb_002391_340--Hb_001472_150 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010 Hb_001472_150--Hb_006483_040 Hb_154038_010 Hb_154038_010 Hb_001472_150--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_001472_150--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_001472_150--Hb_008453_050 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_029991_010 Hb_029991_010 Hb_008195_090--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_008195_090--Hb_002387_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_006483_040--Hb_154038_010 Hb_006483_040--Hb_064445_020 Hb_006483_040--Hb_008453_050 Hb_085682_010 Hb_085682_010 Hb_000329_120--Hb_085682_010 Hb_000329_120--Hb_002391_340 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00586824 0.872393 1.25324 0.00594238 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0209976 2.55694

CAGE analysis