Hb_008253_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig8253: 74061-75118
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36220g
description POPTRDRAFT_549635; hypothetical protein
nr
ID XP_002298589.1
description hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
swissprot
ID P81394
description Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1
trembl
ID B9GIZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36220g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 315

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008253_050 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
2 Hb_041139_010 0.0546574805 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_011618_010 0.069223414 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
4 Hb_001894_100 0.0742711772 - - PREDICTED: kininogen-1-like [Jatropha curcas]
5 Hb_005348_050 0.0861099463 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_000223_090 0.0892964442 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_005539_150 0.0905192481 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
8 Hb_001104_220 0.0936420043 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
9 Hb_005622_040 0.0976862165 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
10 Hb_000477_090 0.099548855 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
11 Hb_008441_010 0.0995726446 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_001384_040 0.0998767971 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
13 Hb_002740_060 0.103787029 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
14 Hb_029386_010 0.1150861426 - - RALF-LIKE 27 family protein [Populus trichocarpa]
15 Hb_000654_020 0.1178803658 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
16 Hb_001790_060 0.1184394244 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
17 Hb_000139_360 0.1186766044 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
18 Hb_000265_030 0.1198849856 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_113379_010 0.1208056602 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
20 Hb_000670_070 0.1257351357 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]

Gene co-expression network

sample Hb_008253_050 Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_008253_050--Hb_041139_010 Hb_011618_010 Hb_011618_010 Hb_008253_050--Hb_011618_010 Hb_001894_100 Hb_001894_100 Hb_008253_050--Hb_001894_100 Hb_005348_050 Hb_005348_050 Hb_008253_050--Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_008253_050--Hb_000223_090 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_041139_010--Hb_011618_010 Hb_008441_010 Hb_008441_010 Hb_041139_010--Hb_008441_010 Hb_002001_030 Hb_002001_030 Hb_041139_010--Hb_002001_030 Hb_041139_010--Hb_001894_100 Hb_172426_070 Hb_172426_070 Hb_041139_010--Hb_172426_070 Hb_001384_040 Hb_001384_040 Hb_011618_010--Hb_001384_040 Hb_011618_010--Hb_005348_050 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410 Hb_001790_060 Hb_001790_060 Hb_001894_100--Hb_001790_060 Hb_001894_100--Hb_005348_050 Hb_001894_100--Hb_000223_090 Hb_133076_010 Hb_133076_010 Hb_001894_100--Hb_133076_010 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_005348_050--Hb_000223_090 Hb_005348_050--Hb_001790_060 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_000223_090--Hb_001790_060 Hb_029386_010 Hb_029386_010 Hb_000223_090--Hb_029386_010 Hb_000223_090--Hb_133076_010 Hb_000477_090 Hb_000477_090 Hb_005539_150--Hb_000477_090 Hb_000654_020 Hb_000654_020 Hb_005539_150--Hb_000654_020 Hb_005539_150--Hb_029386_010 Hb_002245_060 Hb_002245_060 Hb_005539_150--Hb_002245_060 Hb_000670_070 Hb_000670_070 Hb_005539_150--Hb_000670_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0609832 0.0958015 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0197337 0.197321

CAGE analysis