Hb_000589_410

Information

Type -
Description -
Location Contig589: 362013-364970
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05900g
description POPTRDRAFT_563930; thylakoid lumenal 15 kDa family protein
nr
ID XP_011033251.1
description PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
swissprot
ID O22160
description Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2
trembl
ID B9HMK8
description Thylakoid lumenal 15 kDa family protein OS=Populus trichocarpa GN=POPTR_0008s05900g PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal 15 kda protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_410 0.0 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
2 Hb_002659_050 0.056943592 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
3 Hb_000185_010 0.084025001 - - Alliin lyase precursor, putative [Ricinus communis]
4 Hb_011618_010 0.0882272534 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_006132_080 0.09030097 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
6 Hb_003186_030 0.0911569046 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
7 Hb_005348_050 0.0919448547 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_000696_060 0.0973981981 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_760 0.0986739854 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
10 Hb_156093_010 0.1044851022 - - hypothetical protein RCOM_0504250 [Ricinus communis]
11 Hb_008948_130 0.1047682335 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002870_070 0.1051436526 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_000012_370 0.1054950801 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000139_360 0.1099357024 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
15 Hb_003033_020 0.1120603205 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
16 Hb_001894_100 0.1124451991 - - PREDICTED: kininogen-1-like [Jatropha curcas]
17 Hb_000251_150 0.1133872149 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
18 Hb_006133_010 0.1147721002 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_004452_070 0.1160191499 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
20 Hb_001049_130 0.1160521434 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000589_410 Hb_000589_410 Hb_002659_050 Hb_002659_050 Hb_000589_410--Hb_002659_050 Hb_000185_010 Hb_000185_010 Hb_000589_410--Hb_000185_010 Hb_011618_010 Hb_011618_010 Hb_000589_410--Hb_011618_010 Hb_006132_080 Hb_006132_080 Hb_000589_410--Hb_006132_080 Hb_003186_030 Hb_003186_030 Hb_000589_410--Hb_003186_030 Hb_005348_050 Hb_005348_050 Hb_000589_410--Hb_005348_050 Hb_006133_010 Hb_006133_010 Hb_002659_050--Hb_006133_010 Hb_002659_050--Hb_005348_050 Hb_004459_050 Hb_004459_050 Hb_002659_050--Hb_004459_050 Hb_043935_010 Hb_043935_010 Hb_002659_050--Hb_043935_010 Hb_008948_130 Hb_008948_130 Hb_002659_050--Hb_008948_130 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000012_370 Hb_000012_370 Hb_000185_010--Hb_000012_370 Hb_000008_160 Hb_000008_160 Hb_000185_010--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_000185_010--Hb_006132_080 Hb_041139_010 Hb_041139_010 Hb_011618_010--Hb_041139_010 Hb_008253_050 Hb_008253_050 Hb_011618_010--Hb_008253_050 Hb_001384_040 Hb_001384_040 Hb_011618_010--Hb_001384_040 Hb_011618_010--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_011618_010--Hb_001894_100 Hb_002121_050 Hb_002121_050 Hb_006132_080--Hb_002121_050 Hb_006132_080--Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_006132_080--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_006132_080--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040 Hb_003186_030--Hb_004452_070 Hb_003186_030--Hb_000251_150 Hb_001191_060 Hb_001191_060 Hb_003186_030--Hb_001191_060 Hb_003033_020 Hb_003033_020 Hb_003186_030--Hb_003033_020 Hb_001348_160 Hb_001348_160 Hb_003186_030--Hb_001348_160 Hb_000223_090 Hb_000223_090 Hb_005348_050--Hb_000223_090 Hb_005348_050--Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_005348_050--Hb_001790_060 Hb_005348_050--Hb_008253_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.864399 0.527699 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0949432 2.09907

CAGE analysis