Hb_001384_040

Information

Type -
Description -
Location Contig1384: 29203-32980
Sequence    

Annotation

kegg
ID rcu:RCOM_0827440
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012085030.1
description PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
swissprot
ID O64882
description Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1
trembl
ID B9S3R8
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0827440 PE=3 SV=1
Gene Ontology
ID GO:0005576
description beta-glucosidase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10534: 29315-29910 , PASA_asmbl_10535: 30062-31372 , PASA_asmbl_10536: 31450-31585 , PASA_asmbl_10537: 32239-32735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001384_040 0.0 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
2 Hb_113379_010 0.0546110896 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
3 Hb_011618_010 0.0741980564 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
4 Hb_002740_060 0.0911989947 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
5 Hb_008253_050 0.0998767971 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
6 Hb_041139_010 0.1010732255 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
7 Hb_002001_030 0.1043406681 - - Plasma membrane ATPase 4 [Gossypium arboreum]
8 Hb_114893_010 0.1112591804 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_012539_080 0.1151384975 - - Polyprotein, putative [Solanum demissum]
10 Hb_004052_030 0.1174192838 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
11 Hb_005348_050 0.11930607 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_001491_070 0.1208826403 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
13 Hb_000445_160 0.1249801608 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
14 Hb_005155_030 0.1262416436 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_000265_030 0.1278380482 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
16 Hb_000139_360 0.1286553192 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
17 Hb_044478_010 0.1297097756 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
18 Hb_004896_030 0.1300837839 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_002122_070 0.1316735459 - - unnamed protein product [Vitis vinifera]
20 Hb_004096_200 0.1320301398 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001384_040 Hb_001384_040 Hb_113379_010 Hb_113379_010 Hb_001384_040--Hb_113379_010 Hb_011618_010 Hb_011618_010 Hb_001384_040--Hb_011618_010 Hb_002740_060 Hb_002740_060 Hb_001384_040--Hb_002740_060 Hb_008253_050 Hb_008253_050 Hb_001384_040--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001384_040--Hb_041139_010 Hb_002001_030 Hb_002001_030 Hb_001384_040--Hb_002001_030 Hb_113379_010--Hb_002740_060 Hb_113379_010--Hb_011618_010 Hb_012539_080 Hb_012539_080 Hb_113379_010--Hb_012539_080 Hb_005155_030 Hb_005155_030 Hb_113379_010--Hb_005155_030 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010 Hb_011618_010--Hb_041139_010 Hb_011618_010--Hb_008253_050 Hb_005348_050 Hb_005348_050 Hb_011618_010--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_005622_040 Hb_005622_040 Hb_002740_060--Hb_005622_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_008253_050--Hb_041139_010 Hb_008253_050--Hb_001894_100 Hb_008253_050--Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_008253_050--Hb_000223_090 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_008441_010 Hb_008441_010 Hb_041139_010--Hb_008441_010 Hb_041139_010--Hb_002001_030 Hb_041139_010--Hb_001894_100 Hb_172426_070 Hb_172426_070 Hb_041139_010--Hb_172426_070 Hb_005018_010 Hb_005018_010 Hb_002001_030--Hb_005018_010 Hb_001491_070 Hb_001491_070 Hb_002001_030--Hb_001491_070 Hb_002001_030--Hb_172426_070 Hb_000621_030 Hb_000621_030 Hb_002001_030--Hb_000621_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0743644 3.75109 3.48882 0 0.0116091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0269121 0 0 1.35849 9.03767

CAGE analysis