Hb_001491_070

Information

Type -
Description -
Location Contig1491: 92376-95935
Sequence    

Annotation

kegg
ID rcu:RCOM_0699150
description transferase, transferring glycosyl groups, putative (EC:2.4.1.134)
nr
ID XP_012091981.1
description PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
swissprot
ID Q9LV16
description Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2
trembl
ID A0A067JP16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21725 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12412: 92231-92490 , PASA_asmbl_12413: 94058-94506 , PASA_asmbl_12414: 94731-96360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_070 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
2 Hb_172426_070 0.0694311708 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
3 Hb_005018_010 0.0759583428 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_003163_010 0.0785971002 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
5 Hb_002001_030 0.0793572356 - - Plasma membrane ATPase 4 [Gossypium arboreum]
6 Hb_000424_130 0.0909213271 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
7 Hb_000139_360 0.0912005888 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
8 Hb_001735_040 0.0973624719 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
9 Hb_008536_020 0.0975435485 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
10 Hb_006831_090 0.0997156299 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
11 Hb_000984_160 0.1001848334 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
12 Hb_016093_030 0.1039254848 - - ankyrin repeat protein [Bruguiera gymnorhiza]
13 Hb_044478_010 0.1053655495 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
14 Hb_156093_010 0.1057221999 - - hypothetical protein RCOM_0504250 [Ricinus communis]
15 Hb_127263_010 0.1060512364 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
16 Hb_029920_010 0.1075403002 - - pepsin A, putative [Ricinus communis]
17 Hb_002600_170 0.1082099842 - - conserved hypothetical protein [Ricinus communis]
18 Hb_041139_010 0.1086789613 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
19 Hb_004970_060 0.1090018602 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
20 Hb_011214_130 0.109339312 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]

Gene co-expression network

sample Hb_001491_070 Hb_001491_070 Hb_172426_070 Hb_172426_070 Hb_001491_070--Hb_172426_070 Hb_005018_010 Hb_005018_010 Hb_001491_070--Hb_005018_010 Hb_003163_010 Hb_003163_010 Hb_001491_070--Hb_003163_010 Hb_002001_030 Hb_002001_030 Hb_001491_070--Hb_002001_030 Hb_000424_130 Hb_000424_130 Hb_001491_070--Hb_000424_130 Hb_000139_360 Hb_000139_360 Hb_001491_070--Hb_000139_360 Hb_172426_070--Hb_003163_010 Hb_006831_090 Hb_006831_090 Hb_172426_070--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_172426_070--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_172426_070--Hb_004032_280 Hb_008536_020 Hb_008536_020 Hb_172426_070--Hb_008536_020 Hb_005018_010--Hb_002001_030 Hb_005018_010--Hb_003163_010 Hb_001516_010 Hb_001516_010 Hb_005018_010--Hb_001516_010 Hb_005018_010--Hb_000424_130 Hb_002835_310 Hb_002835_310 Hb_005018_010--Hb_002835_310 Hb_003163_010--Hb_006831_090 Hb_003911_050 Hb_003911_050 Hb_003163_010--Hb_003911_050 Hb_003163_010--Hb_002600_170 Hb_003163_010--Hb_008536_020 Hb_041139_010 Hb_041139_010 Hb_002001_030--Hb_041139_010 Hb_002001_030--Hb_172426_070 Hb_000621_030 Hb_000621_030 Hb_002001_030--Hb_000621_030 Hb_001384_040 Hb_001384_040 Hb_002001_030--Hb_001384_040 Hb_000152_350 Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_002835_310 Hb_007545_070 Hb_007545_070 Hb_000424_130--Hb_007545_070 Hb_000300_110 Hb_000300_110 Hb_000424_130--Hb_000300_110 Hb_029920_010 Hb_029920_010 Hb_000424_130--Hb_029920_010 Hb_127263_010 Hb_127263_010 Hb_000424_130--Hb_127263_010 Hb_000696_060 Hb_000696_060 Hb_000139_360--Hb_000696_060 Hb_008195_090 Hb_008195_090 Hb_000139_360--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_000139_360--Hb_044478_010 Hb_000139_360--Hb_172426_070 Hb_029991_010 Hb_029991_010 Hb_000139_360--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_000139_360--Hb_002387_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317541 0.289765 6.77361 6.0977 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0332421 0.982929 10.8921

CAGE analysis