Hb_005018_010

Information

Type -
Description -
Location Contig5018: 9268-10442
Sequence    

Annotation

kegg
ID rcu:RCOM_0787590
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002531099.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9SYN0
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0787590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45896: 9283-10341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005018_010 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_001491_070 0.0759583428 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
3 Hb_002001_030 0.0772287691 - - Plasma membrane ATPase 4 [Gossypium arboreum]
4 Hb_003163_010 0.0833172312 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
5 Hb_001516_010 0.0881991801 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
6 Hb_000424_130 0.0889646694 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
7 Hb_002835_310 0.0907320475 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002391_030 0.0917057985 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
9 Hb_172426_070 0.0937192534 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
10 Hb_012655_010 0.0952421109 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
11 Hb_000941_110 0.1017456824 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_127263_010 0.1019962283 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
13 Hb_005731_010 0.1041306142 - - hypothetical protein VITISV_030941 [Vitis vinifera]
14 Hb_005535_070 0.1062687871 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029920_010 0.1085672071 - - pepsin A, putative [Ricinus communis]
16 Hb_162174_010 0.1090939835 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_000239_050 0.1107569626 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
18 Hb_000816_240 0.1109103792 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
19 Hb_002572_040 0.1119831863 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
20 Hb_000000_390 0.1121303137 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]

Gene co-expression network

sample Hb_005018_010 Hb_005018_010 Hb_001491_070 Hb_001491_070 Hb_005018_010--Hb_001491_070 Hb_002001_030 Hb_002001_030 Hb_005018_010--Hb_002001_030 Hb_003163_010 Hb_003163_010 Hb_005018_010--Hb_003163_010 Hb_001516_010 Hb_001516_010 Hb_005018_010--Hb_001516_010 Hb_000424_130 Hb_000424_130 Hb_005018_010--Hb_000424_130 Hb_002835_310 Hb_002835_310 Hb_005018_010--Hb_002835_310 Hb_172426_070 Hb_172426_070 Hb_001491_070--Hb_172426_070 Hb_001491_070--Hb_003163_010 Hb_001491_070--Hb_002001_030 Hb_001491_070--Hb_000424_130 Hb_000139_360 Hb_000139_360 Hb_001491_070--Hb_000139_360 Hb_041139_010 Hb_041139_010 Hb_002001_030--Hb_041139_010 Hb_002001_030--Hb_172426_070 Hb_000621_030 Hb_000621_030 Hb_002001_030--Hb_000621_030 Hb_001384_040 Hb_001384_040 Hb_002001_030--Hb_001384_040 Hb_003163_010--Hb_172426_070 Hb_006831_090 Hb_006831_090 Hb_003163_010--Hb_006831_090 Hb_003911_050 Hb_003911_050 Hb_003163_010--Hb_003911_050 Hb_002600_170 Hb_002600_170 Hb_003163_010--Hb_002600_170 Hb_008536_020 Hb_008536_020 Hb_003163_010--Hb_008536_020 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_000152_350 Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_002835_310 Hb_007545_070 Hb_007545_070 Hb_000424_130--Hb_007545_070 Hb_000300_110 Hb_000300_110 Hb_000424_130--Hb_000300_110 Hb_029920_010 Hb_029920_010 Hb_000424_130--Hb_029920_010 Hb_127263_010 Hb_127263_010 Hb_000424_130--Hb_127263_010 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_002835_310--Hb_007545_070 Hb_002835_310--Hb_003938_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206677 4.78458 4.33312 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.880433 5.78234

CAGE analysis