Hb_003911_050

Information

Type -
Description -
Location Contig3911: 72300-74416
Sequence    

Annotation

kegg
ID cic:CICLE_v10024612mg
description hypothetical protein
nr
ID XP_006443419.1
description hypothetical protein CICLE_v10024612mg [Citrus clementina]
swissprot
ID Q9SHI2
description Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2
trembl
ID V4VTZ9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024612mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003911_050 0.0 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
2 Hb_003163_010 0.074376885 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
3 Hb_007904_150 0.0885259444 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
4 Hb_172426_070 0.0933601476 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
5 Hb_007850_020 0.0934435157 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012035_010 0.0944657798 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
7 Hb_000941_110 0.0956639957 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_002740_050 0.0962830989 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
9 Hb_004204_060 0.09646558 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
10 Hb_003855_060 0.099809386 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_126714_010 0.1013211591 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
12 Hb_111985_100 0.1014972598 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_006588_140 0.101910779 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
14 Hb_004076_060 0.1027599818 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
15 Hb_149694_010 0.104932381 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_005833_010 0.1064678411 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
17 Hb_000487_080 0.1094662833 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
18 Hb_000321_110 0.1101301868 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
19 Hb_000000_390 0.1134966086 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
20 Hb_000928_030 0.1142822004 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003911_050 Hb_003911_050 Hb_003163_010 Hb_003163_010 Hb_003911_050--Hb_003163_010 Hb_007904_150 Hb_007904_150 Hb_003911_050--Hb_007904_150 Hb_172426_070 Hb_172426_070 Hb_003911_050--Hb_172426_070 Hb_007850_020 Hb_007850_020 Hb_003911_050--Hb_007850_020 Hb_012035_010 Hb_012035_010 Hb_003911_050--Hb_012035_010 Hb_000941_110 Hb_000941_110 Hb_003911_050--Hb_000941_110 Hb_003163_010--Hb_172426_070 Hb_006831_090 Hb_006831_090 Hb_003163_010--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_003163_010--Hb_002600_170 Hb_008536_020 Hb_008536_020 Hb_003163_010--Hb_008536_020 Hb_001491_070 Hb_001491_070 Hb_003163_010--Hb_001491_070 Hb_003855_060 Hb_003855_060 Hb_007904_150--Hb_003855_060 Hb_002740_050 Hb_002740_050 Hb_007904_150--Hb_002740_050 Hb_001981_050 Hb_001981_050 Hb_007904_150--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_007904_150--Hb_000318_310 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_185811_010 Hb_185811_010 Hb_007904_150--Hb_185811_010 Hb_172426_070--Hb_006831_090 Hb_172426_070--Hb_001491_070 Hb_172426_070--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_172426_070--Hb_004032_280 Hb_172426_070--Hb_008536_020 Hb_000985_160 Hb_000985_160 Hb_007850_020--Hb_000985_160 Hb_007850_020--Hb_012035_010 Hb_004204_060 Hb_004204_060 Hb_007850_020--Hb_004204_060 Hb_000487_080 Hb_000487_080 Hb_007850_020--Hb_000487_080 Hb_002078_330 Hb_002078_330 Hb_007850_020--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_007850_020--Hb_002043_020 Hb_012035_010--Hb_000985_160 Hb_012035_010--Hb_000487_080 Hb_012035_010--Hb_004204_060 Hb_016734_100 Hb_016734_100 Hb_012035_010--Hb_016734_100 Hb_008147_020 Hb_008147_020 Hb_012035_010--Hb_008147_020 Hb_004076_060 Hb_004076_060 Hb_000941_110--Hb_004076_060 Hb_005731_010 Hb_005731_010 Hb_000941_110--Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_000941_110--Hb_012655_010 Hb_001958_010 Hb_001958_010 Hb_000941_110--Hb_001958_010 Hb_005018_010 Hb_005018_010 Hb_000941_110--Hb_005018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.435039 0.534272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0312276 0.53715

CAGE analysis