Hb_004204_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig4204: 36749-38184
Sequence    

Annotation

kegg
ID tcc:TCM_014180
description Transcription factor, putative
nr
ID AGL39714.1
description NAC transcription factor 058, partial [Jatropha curcas]
swissprot
ID Q93VY3
description NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
trembl
ID R4NFZ2
description NAC transcription factor 058 (Fragment) OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein ataf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41521: 36927-37208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_060 0.0 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
2 Hb_007850_020 0.0346840848 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000985_160 0.0434797561 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
4 Hb_012035_010 0.0663485857 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
5 Hb_000152_350 0.0915510988 - - PREDICTED: enolase [Jatropha curcas]
6 Hb_012655_010 0.0932371071 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
7 Hb_002078_330 0.0945708633 - - lipid binding protein, putative [Ricinus communis]
8 Hb_003163_010 0.0946352382 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
9 Hb_005731_010 0.0954727997 - - hypothetical protein VITISV_030941 [Vitis vinifera]
10 Hb_003911_050 0.09646558 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
11 Hb_000000_390 0.0991674762 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
12 Hb_002043_020 0.1006503949 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_029920_010 0.1013073843 - - pepsin A, putative [Ricinus communis]
14 Hb_000538_090 0.1058288948 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
15 Hb_000487_080 0.1059157458 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
16 Hb_068580_010 0.1063562053 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
17 Hb_172426_070 0.1074712175 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
18 Hb_008147_020 0.108273822 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
19 Hb_002704_060 0.1099545395 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
20 Hb_000333_010 0.1109424516 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_004204_060 Hb_004204_060 Hb_007850_020 Hb_007850_020 Hb_004204_060--Hb_007850_020 Hb_000985_160 Hb_000985_160 Hb_004204_060--Hb_000985_160 Hb_012035_010 Hb_012035_010 Hb_004204_060--Hb_012035_010 Hb_000152_350 Hb_000152_350 Hb_004204_060--Hb_000152_350 Hb_012655_010 Hb_012655_010 Hb_004204_060--Hb_012655_010 Hb_002078_330 Hb_002078_330 Hb_004204_060--Hb_002078_330 Hb_007850_020--Hb_000985_160 Hb_007850_020--Hb_012035_010 Hb_000487_080 Hb_000487_080 Hb_007850_020--Hb_000487_080 Hb_007850_020--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_007850_020--Hb_002043_020 Hb_000985_160--Hb_012035_010 Hb_000985_160--Hb_002043_020 Hb_000985_160--Hb_002078_330 Hb_008147_020 Hb_008147_020 Hb_000985_160--Hb_008147_020 Hb_012035_010--Hb_000487_080 Hb_016734_100 Hb_016734_100 Hb_012035_010--Hb_016734_100 Hb_012035_010--Hb_008147_020 Hb_034235_010 Hb_034235_010 Hb_000152_350--Hb_034235_010 Hb_000152_350--Hb_002078_330 Hb_000424_130 Hb_000424_130 Hb_000152_350--Hb_000424_130 Hb_029920_010 Hb_029920_010 Hb_000152_350--Hb_029920_010 Hb_149644_030 Hb_149644_030 Hb_000152_350--Hb_149644_030 Hb_000300_110 Hb_000300_110 Hb_000152_350--Hb_000300_110 Hb_005731_010 Hb_005731_010 Hb_012655_010--Hb_005731_010 Hb_004076_060 Hb_004076_060 Hb_012655_010--Hb_004076_060 Hb_000941_110 Hb_000941_110 Hb_012655_010--Hb_000941_110 Hb_017043_040 Hb_017043_040 Hb_012655_010--Hb_017043_040 Hb_000109_140 Hb_000109_140 Hb_012655_010--Hb_000109_140 Hb_002078_330--Hb_002043_020 Hb_002704_060 Hb_002704_060 Hb_002078_330--Hb_002704_060 Hb_002078_330--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_002078_330--Hb_143629_180 Hb_000538_090 Hb_000538_090 Hb_002078_330--Hb_000538_090 Hb_002078_330--Hb_034235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.10409 0.771511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0720197 1.16011

CAGE analysis