Hb_000941_110

Information

Type -
Description -
Location Contig941: 113854-115683
Sequence    

Annotation

kegg
ID rcu:RCOM_0446270
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_002534374.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID P93749
description Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1
trembl
ID B9T805
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0446270 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable protein kinase at2g41970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_110 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_004076_060 0.0679777245 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
3 Hb_005731_010 0.0802835795 - - hypothetical protein VITISV_030941 [Vitis vinifera]
4 Hb_012655_010 0.0835114452 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
5 Hb_001958_010 0.0862334428 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
6 Hb_003911_050 0.0956639957 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
7 Hb_005018_010 0.1017456824 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_000189_180 0.1017511819 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
9 Hb_017043_040 0.1035880244 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_111985_100 0.1050591157 - - beta-galactosidase, putative [Ricinus communis]
11 Hb_001277_010 0.1064341744 - - unknown [Populus trichocarpa]
12 Hb_002001_030 0.1117587069 - - Plasma membrane ATPase 4 [Gossypium arboreum]
13 Hb_032572_010 0.1150908307 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
14 Hb_003163_010 0.1156073019 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
15 Hb_162174_010 0.1157228104 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_001516_010 0.1186816166 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
17 Hb_172426_070 0.1212490442 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
18 Hb_041139_010 0.1289070869 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
19 Hb_004204_060 0.1310783085 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
20 Hb_000109_140 0.1317355304 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000941_110 Hb_000941_110 Hb_004076_060 Hb_004076_060 Hb_000941_110--Hb_004076_060 Hb_005731_010 Hb_005731_010 Hb_000941_110--Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_000941_110--Hb_012655_010 Hb_001958_010 Hb_001958_010 Hb_000941_110--Hb_001958_010 Hb_003911_050 Hb_003911_050 Hb_000941_110--Hb_003911_050 Hb_005018_010 Hb_005018_010 Hb_000941_110--Hb_005018_010 Hb_004076_060--Hb_005731_010 Hb_004076_060--Hb_001958_010 Hb_000189_180 Hb_000189_180 Hb_004076_060--Hb_000189_180 Hb_004076_060--Hb_012655_010 Hb_000109_140 Hb_000109_140 Hb_004076_060--Hb_000109_140 Hb_005731_010--Hb_012655_010 Hb_005731_010--Hb_000189_180 Hb_005731_010--Hb_000109_140 Hb_005731_010--Hb_001958_010 Hb_017043_040 Hb_017043_040 Hb_012655_010--Hb_017043_040 Hb_012655_010--Hb_000109_140 Hb_004204_060 Hb_004204_060 Hb_012655_010--Hb_004204_060 Hb_001958_010--Hb_000189_180 Hb_032572_010 Hb_032572_010 Hb_001958_010--Hb_032572_010 Hb_001958_010--Hb_000109_140 Hb_003163_010 Hb_003163_010 Hb_003911_050--Hb_003163_010 Hb_007904_150 Hb_007904_150 Hb_003911_050--Hb_007904_150 Hb_172426_070 Hb_172426_070 Hb_003911_050--Hb_172426_070 Hb_007850_020 Hb_007850_020 Hb_003911_050--Hb_007850_020 Hb_012035_010 Hb_012035_010 Hb_003911_050--Hb_012035_010 Hb_001491_070 Hb_001491_070 Hb_005018_010--Hb_001491_070 Hb_002001_030 Hb_002001_030 Hb_005018_010--Hb_002001_030 Hb_005018_010--Hb_003163_010 Hb_001516_010 Hb_001516_010 Hb_005018_010--Hb_001516_010 Hb_000424_130 Hb_000424_130 Hb_005018_010--Hb_000424_130 Hb_002835_310 Hb_002835_310 Hb_005018_010--Hb_002835_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.143695 0.177313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0340432 0.172372

CAGE analysis