Hb_007850_020

Information

Type -
Description -
Location Contig7850: 36143-38245
Sequence    

Annotation

kegg
ID rcu:RCOM_1467380
description hypothetical protein
nr
ID XP_002514604.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1467380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58087: 36069-38759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000985_160 0.0317431268 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
3 Hb_012035_010 0.0326764255 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
4 Hb_004204_060 0.0346840848 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
5 Hb_000487_080 0.0767385755 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
6 Hb_002078_330 0.0784674742 - - lipid binding protein, putative [Ricinus communis]
7 Hb_002043_020 0.079097379 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
8 Hb_008147_020 0.0831955676 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
9 Hb_000538_090 0.085709537 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
10 Hb_000000_390 0.086860782 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
11 Hb_001031_140 0.0873816821 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
12 Hb_002704_060 0.0923827491 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_001141_180 0.0928075415 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
14 Hb_001426_020 0.0930355373 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
15 Hb_003911_050 0.0934435157 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_001642_020 0.0948222724 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
17 Hb_000152_350 0.0948907701 - - PREDICTED: enolase [Jatropha curcas]
18 Hb_016734_100 0.0963484991 - - -
19 Hb_068580_010 0.098107531 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
20 Hb_001652_100 0.1020105311 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]

Gene co-expression network

sample Hb_007850_020 Hb_007850_020 Hb_000985_160 Hb_000985_160 Hb_007850_020--Hb_000985_160 Hb_012035_010 Hb_012035_010 Hb_007850_020--Hb_012035_010 Hb_004204_060 Hb_004204_060 Hb_007850_020--Hb_004204_060 Hb_000487_080 Hb_000487_080 Hb_007850_020--Hb_000487_080 Hb_002078_330 Hb_002078_330 Hb_007850_020--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_007850_020--Hb_002043_020 Hb_000985_160--Hb_004204_060 Hb_000985_160--Hb_012035_010 Hb_000985_160--Hb_002043_020 Hb_000985_160--Hb_002078_330 Hb_008147_020 Hb_008147_020 Hb_000985_160--Hb_008147_020 Hb_012035_010--Hb_000487_080 Hb_012035_010--Hb_004204_060 Hb_016734_100 Hb_016734_100 Hb_012035_010--Hb_016734_100 Hb_012035_010--Hb_008147_020 Hb_000152_350 Hb_000152_350 Hb_004204_060--Hb_000152_350 Hb_012655_010 Hb_012655_010 Hb_004204_060--Hb_012655_010 Hb_004204_060--Hb_002078_330 Hb_001426_020 Hb_001426_020 Hb_000487_080--Hb_001426_020 Hb_000487_080--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_000487_080--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_000487_080--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_000487_080--Hb_163566_010 Hb_002078_330--Hb_002043_020 Hb_002704_060 Hb_002704_060 Hb_002078_330--Hb_002704_060 Hb_002078_330--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_002078_330--Hb_143629_180 Hb_000538_090 Hb_000538_090 Hb_002078_330--Hb_000538_090 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_002043_020--Hb_008147_020 Hb_001206_110 Hb_001206_110 Hb_002043_020--Hb_001206_110 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.32815 5.21366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.291657 6.94864

CAGE analysis