Hb_000538_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig538: 87825-91617
Sequence    

Annotation

kegg
ID rcu:RCOM_1603380
description hypothetical protein
nr
ID XP_002526579.1
description hypothetical protein RCOM_1603380 [Ricinus communis]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID B9SKR0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1603380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47643: 89533-89977 , PASA_asmbl_47644: 90085-90522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_090 0.0 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
2 Hb_000000_390 0.0481539841 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
3 Hb_002078_330 0.0606920081 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000058_180 0.0633769436 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
5 Hb_012395_240 0.0662252227 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
6 Hb_008147_020 0.0695123238 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
7 Hb_143629_180 0.0698350169 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
8 Hb_189208_070 0.0704020194 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
9 Hb_004635_120 0.0722614746 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
10 Hb_002704_060 0.0741027716 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
11 Hb_002043_020 0.0746635572 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
12 Hb_012035_010 0.0760656624 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
13 Hb_000487_080 0.0825601664 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
14 Hb_012098_100 0.0843745832 - - zinc finger protein, putative [Ricinus communis]
15 Hb_001638_200 0.0850397154 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
16 Hb_001652_100 0.0851072165 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
17 Hb_000152_350 0.0852107126 - - PREDICTED: enolase [Jatropha curcas]
18 Hb_007850_020 0.085709537 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000928_030 0.0857878818 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
20 Hb_001642_020 0.0871518528 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_090 Hb_000538_090 Hb_000000_390 Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_002078_330 Hb_002078_330 Hb_000538_090--Hb_002078_330 Hb_000058_180 Hb_000058_180 Hb_000538_090--Hb_000058_180 Hb_012395_240 Hb_012395_240 Hb_000538_090--Hb_012395_240 Hb_008147_020 Hb_008147_020 Hb_000538_090--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_000538_090--Hb_143629_180 Hb_051663_010 Hb_051663_010 Hb_000000_390--Hb_051663_010 Hb_004635_120 Hb_004635_120 Hb_000000_390--Hb_004635_120 Hb_000000_390--Hb_012395_240 Hb_000000_390--Hb_002078_330 Hb_001638_200 Hb_001638_200 Hb_000000_390--Hb_001638_200 Hb_002043_020 Hb_002043_020 Hb_002078_330--Hb_002043_020 Hb_002704_060 Hb_002704_060 Hb_002078_330--Hb_002704_060 Hb_002078_330--Hb_008147_020 Hb_002078_330--Hb_143629_180 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_001652_100 Hb_001652_100 Hb_000058_180--Hb_001652_100 Hb_007922_030 Hb_007922_030 Hb_000058_180--Hb_007922_030 Hb_000058_180--Hb_008147_020 Hb_008021_060 Hb_008021_060 Hb_000058_180--Hb_008021_060 Hb_001642_020 Hb_001642_020 Hb_000058_180--Hb_001642_020 Hb_012395_240--Hb_004635_120 Hb_006816_380 Hb_006816_380 Hb_012395_240--Hb_006816_380 Hb_000928_030 Hb_000928_030 Hb_012395_240--Hb_000928_030 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070 Hb_008147_020--Hb_002043_020 Hb_008147_020--Hb_002704_060 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_008147_020--Hb_001031_140 Hb_143629_180--Hb_002043_020 Hb_017434_040 Hb_017434_040 Hb_143629_180--Hb_017434_040 Hb_143629_180--Hb_002704_060 Hb_143629_180--Hb_008147_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0807016 2.7353 2.23197 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0507004 2.49865

CAGE analysis